View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21413_low_31 (Length: 282)
Name: NF21413_low_31
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 266
Target Start/End: Original strand, 33902755 - 33903012
Alignment:
| Q |
9 |
gagatgaagtaataacataaggtgagtaagagagggaaaattgttaaaaaattatcgcagaagagttgtacaaatattatttcttatagttaaatacatg |
108 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
33902755 |
gagatgaagtaataacataacgtgagtaagagagggaaaattgtcaaaaaattatcacagaagagttgtacaaatatcatttcttatagttaaatatgtg |
33902854 |
T |
|
| Q |
109 |
cttatttagtaaatgttgttttggtgttcaaaaagtgaaatctataatgctagatccaagaaagttataaagtnnnnnnnnctaggcaagaaagcatgca |
208 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
33902855 |
cttgtttagtaaatgttcttttggtgttcaaaaagtgaaatctataatgctagatccaagaaagttataaaataaaaaaaactaggcaagaaagcatgca |
33902954 |
T |
|
| Q |
209 |
ggtacttttaattgggaaaacttacttagctggtggcttagcagggtccttaaggagg |
266 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33902955 |
ggtacttttaattggggaaacttacttagctggtggcttagcagggtccttaaggagg |
33903012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 27563555 - 27563485
Alignment:
| Q |
22 |
aacataaggtgagtaagagagggaaaattgttaaaaaattatcgcagaagagttgtacaaatattatttct |
92 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||| |||||||||| ||| || |||||||||||| |||||| |
|
|
| T |
27563555 |
aacataatgtgagtatgagagagaaaattgtcaaaaaattatagcaaaatgattgtacaaatatcatttct |
27563485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 32196701 - 32196647
Alignment:
| Q |
30 |
gtgagtaagagagggaaaattgttaaaaaattatcgcagaagagttgtacaaata |
84 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||| ||| ||| |||||||||||| |
|
|
| T |
32196701 |
gtgagtatgagagagaaaattgtcaaaaaattattgcaaaagggttgtacaaata |
32196647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 3091809 - 3091742
Alignment:
| Q |
25 |
ataaggtgagtaagagagggaaaattgttaaaaaattatcgcagaagagttgtacaaatattatttct |
92 |
Q |
| |
|
|||| ||||||| ||||| ||||||||| ||||| ||||| || || |||||||||||||| |||||| |
|
|
| T |
3091809 |
ataatgtgagtatgagagagaaaattgtcaaaaagttatcacaaaatagttgtacaaatatcatttct |
3091742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 11742976 - 11743052
Alignment:
| Q |
16 |
agtaataacataaggtgagtaagagagggaaaattgttaaaaaattatcgcagaagagttgtacaaatattatttct |
92 |
Q |
| |
|
||||| || |||| ||||||| ||||| |||||||| |||||||||| | || ||||||||||||||||||||| |
|
|
| T |
11742976 |
agtaaaaatataatgtgagtatgagagaaaaaattgtctaaaaattatcaaaaaatagttgtacaaatattatttct |
11743052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University