View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_low_36 (Length: 250)
Name: NF21413_low_36
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 40953036 - 40953270
Alignment:
| Q |
16 |
atatgcagagtagtaaatcaagtctctaatttatgaaacaagataagaccataaaaatgtaatctaatatctaaatagtagaaggnnnnnnnntgcatct |
115 |
Q |
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| T |
40953036 |
atatgcagagtagtaaatcaagtctctaatttatgaaacaagataagaccataaaaatgtaatctaatatctaaatagtagaaggaaaaaaaatgcatct |
40953135 |
T |
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| Q |
116 |
caatttgtagaatcaagttactcacatatcaaaaagcttagtccttgtccaccagtgacctgaattgaatataagaacatcagaatcaacccattcatgg |
215 |
Q |
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| T |
40953136 |
caatttgtagaatcaagttactcacatatcaaaaagcttagtccttgtccaccagtgacctgaattgaatataagaacatcagaatcaacccattcatgg |
40953235 |
T |
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| Q |
216 |
ctaatatcatctatcttgtccaatttcagtgtcgt |
250 |
Q |
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| T |
40953236 |
ctaatatcatctatcttgtccaatttcagtgtcgt |
40953270 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 39083985 - 39083911
Alignment:
| Q |
164 |
ccaccagtgacctgaattgaatataagaacatcagaatcaacccattcatggctaatatcatctatcttgtccaa |
238 |
Q |
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| T |
39083985 |
ccaccagtgaccagtattgaatataagaatatctgaatcaatccattgatgacttatatcatctaacttgtccaa |
39083911 |
T |
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