View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21413_low_37 (Length: 248)

Name: NF21413_low_37
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21413_low_37
NF21413_low_37
[»] chr8 (3 HSPs)
chr8 (1-230)||(4082180-4082409)
chr8 (1-230)||(4086329-4086558)
chr8 (1-230)||(4091889-4092118)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4082409 - 4082180
Alignment:
Q  1 cctttcttttcttcactctctttgcctctctggacaggccaaacaagaagcgtgttctccaaatgctcattattatggcgtttaatgctttgatttcggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  4082409 cctttcttttcttcactctctttgcctctctggacaggccaaacaacaagcgtgttctccaaatgctcattattatggtgcttaatgctttgatttcggg 4082310  T
Q  101 attcatcgtcaaacttttgaaccatgatttcgcaaaaattgttgggtgggcgtggtcaatccctattatcttggtcctgggctttagatacaacgatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4082309 attcatcgtcaaacttttgaaccatgatttcgcaaaaattgttgggtggacctggtcaatccctattatcttggtcctgggctttagatacaacgatgtt 4082210  T
Q  201 ctcctccaactagcttcaatcggaaattcc 230  Q
    ||||||||||||||||||||||||||||||    
T  4082209 ctcctccaactagcttcaatcggaaattcc 4082180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4086558 - 4086329
Alignment:
Q  1 cctttcttttcttcactctctttgcctctctggacaggccaaacaagaagcgtgttctccaaatgctcattattatggcgtttaatgctttgatttcggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  4086558 cctttcttttcttcactctctttgcctctctggacaggccaaacaacaagcgtgttctccaaatgctcattattatggtgcttaatgctttgatttcggg 4086459  T
Q  101 attcatcgtcaaacttttgaaccatgatttcgcaaaaattgttgggtgggcgtggtcaatccctattatcttggtcctgggctttagatacaacgatgtt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4086458 attcatcgtcaaacttttgaaccatgaattcgcaaaaattgttgggtggacctggtcaatccctattatcttggtcctgggctttagatacaacgatgtt 4086359  T
Q  201 ctcctccaactagcttcaatcggaaattcc 230  Q
    ||||||||||||||||||||||||||||||    
T  4086358 ctcctccaactagcttcaatcggaaattcc 4086329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4092118 - 4091889
Alignment:
Q  1 cctttcttttcttcactctctttgcctctctggacaggccaaacaagaagcgtgttctccaaatgctcattattatggcgtttaatgctttgatttcggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  4092118 cctttcttttcttcactctctttgcctctctggacaggccaaacaacaagcgtgttctccaaatgctcattattatggtgcttaatgctttgatttcggg 4092019  T
Q  101 attcatcgtcaaacttttgaaccatgatttcgcaaaaattgttgggtgggcgtggtcaatccctattatcttggtcctgggctttagatacaacgatgtt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||    
T  4092018 attcatcgtcaaacttttgaaccatgacttcgcaaaaattgttgggtgggcctggtcaatccctattctcttggtcctggggtttagatacaatgatgtt 4091919  T
Q  201 ctcctccaactagcttcaatcggaaattcc 230  Q
    |||||||||||| |||||||||||||||||    
T  4091918 ctcctccaactatcttcaatcggaaattcc 4091889  T

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