View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21413_low_38 (Length: 246)

Name: NF21413_low_38
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21413_low_38
NF21413_low_38
[»] chr8 (9 HSPs)
chr8 (1-241)||(2037010-2037247)
chr8 (40-241)||(2046387-2046588)
chr8 (102-241)||(2054202-2054341)
chr8 (102-235)||(2032961-2033094)
chr8 (102-226)||(10767609-10767730)
chr8 (102-235)||(1950438-1950568)
chr8 (102-231)||(2028429-2028555)
chr8 (123-241)||(2050196-2050311)
chr8 (123-236)||(2057164-2057274)
[»] chr2 (1 HSPs)
chr2 (147-220)||(28786155-28786228)
[»] chr4 (1 HSPs)
chr4 (102-192)||(48908699-48908786)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2037247 - 2037010
Alignment:
Q  1 cctttaatctgatgtgtgtcggtgctacaaacagattacagaataaccaaagttcaaggagcacataannnnnnnnatacacatgcatacagacgtacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||| |||| |    
T  2037247 cctttaatctgatgtgtgtcggtgctacaaacagattacagaataaccaaagttcaaggagcacataaatttc---atacacatgcatacagatgtacaa 2037151  T
Q  101 gtacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2037150 gtacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataa 2037051  T
Q  201 atatcataattgctattgtaaataaaagatctattcatatc 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2037050 atatcataattgctattgtaaataaaagatctattcatatc 2037010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 2046588 - 2046387
Alignment:
Q  40 agaataaccaaagttcaaggagcacataannnnnnnnatacacatgcatacagacgtactagtacctgcataccacaggaatctcttctggtttaagagt 139  Q
    |||||||||||||||||||||||||||||        ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||    
T  2046588 agaataaccaaagttcaaggagcacataattttttttatacacatgcatacaaatgtactagtacctgcataccacaggaatctcttctggtttgagagt 2046489  T
Q  140 atcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaataaaagatctattcata 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2046488 atcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaataaaagatctattcata 2046389  T
Q  240 tc 241  Q
    ||    
T  2046388 tc 2046387  T

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Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 102 - 241
Target Start/End: Complemental strand, 2054341 - 2054202
Alignment:
Q  102 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 201  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||| ||||| ||||  |||||||||||||||| | ||||||||    
T  2054341 tacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagctataaa 2054242  T
Q  202 tatcataattgctattgtaaataaaagatctattcatatc 241  Q
    |||||  |||||||||||||||||| ||||| | ||||||    
T  2054241 tatcaacattgctattgtaaataaaggatctctgcatatc 2054202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 2033094 - 2032961
Alignment:
Q  102 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 201  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||   |||| |||| ||||||||||||||||||| ||||||||    
T  2033094 tacctgcataccacaggaaactcttgtggtttgagagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctggtgagctataaa 2032995  T
Q  202 tatcataattgctattgtaaataaaagatctatt 235  Q
    ||||| |||| ||||| |||| ||| ||||||||    
T  2032994 tatcaaaattactattataaacaaaggatctatt 2032961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 10767730 - 10767609
Alignment:
Q  102 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 201  Q
    ||||||||||| |||||||| |||||||||||  ||||||||||   |||||||||||| | ||||||||| |||||||| |||||||||| ||||||||    
T  10767730 tacctgcatactacaggaatatcttctggtttgggagtatcagg---agccaagtaacatgtaaaagtatccctccaattaagtgctggtgagctataaa 10767634  T
Q  202 tatcataattgctattgtaaataaa 226  Q
    ||||| | || ||||||||||||||    
T  10767633 tatcaaagttactattgtaaataaa 10767609  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 1950438 - 1950568
Alignment:
Q  102 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 201  Q
    ||||||||||| |||||||  |||| ||||||  ||||||||||   |||||||||||||||| ||||||| ||||||||||||||||||| |||||| |    
T  1950438 tacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaagtaacaagcacaagtatccctccaattgagtgctggtgagctataca 1950534  T
Q  202 tatcataattgctattgtaaataaaagatctatt 235  Q
     |||| ||||||| ||||||||||| ||| ||||    
T  1950535 aatcaaaattgcttttgtaaataaatgatttatt 1950568  T

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Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 2028555 - 2028429
Alignment:
Q  102 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa 201  Q
    ||||||||||| |||||||  |||||||||||  ||||||||||   ||||||| |||||| | ||||||| ||||||||||||||||||| |||||| |    
T  2028555 tacctgcatacaacaggaaaatcttctggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca 2028459  T
Q  202 tatcataattgctattgtaaataaaagatc 231  Q
     |||| ||||||| ||||||||||| ||||    
T  2028458 aatcaaaattgcttttgtaaataaatgatc 2028429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 241
Target Start/End: Complemental strand, 2050311 - 2050196
Alignment:
Q  123 tcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaa 222  Q
    |||||||||||  ||||||||||   |||||||||||| |||||| |||| |||||||||||||| || | ||||||||||||| |||| ||||| ||||    
T  2050311 tcttctggtttgggagtatcagg---agccaagtaacacgcaaaactatccctccaattgagtgccggagagctataaatatcaaaattactattataaa 2050215  T
Q  223 taaaagatctattcatatc 241  Q
     ||| ||||||||||||||    
T  2050214 caaaggatctattcatatc 2050196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 2057274 - 2057164
Alignment:
Q  123 tcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaa 222  Q
    |||||||||||  ||||||||||   |||||||||||||  |||| |||| |||||||||||||| || | |||||||||||||  ||||||||||||||    
T  2057274 tcttctggttttggagtatcagg---agccaagtaacaactaaaactatccctccaattgagtgccggagagctataaatatcaacattgctattgtaaa 2057178  T
Q  223 taaaagatctattc 236  Q
     ||| |||||||||    
T  2057177 caaaggatctattc 2057164  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 28786155 - 28786228
Alignment:
Q  147 ggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgta 220  Q
    ||||||||| ||||  |||||||||| |||||||||||||||| ||  ||||||| || | |||||||||||||    
T  28786155 ggagccaaggaacacacaaaagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgta 28786228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 48908699 - 48908786
Alignment:
Q  102 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtg 192  Q
    ||||||||||| | |||||  |||||||||||  ||||||||||   ||||||| |||||  ||||||||| ||||||||||| |||||||    
T  48908699 tacctgcatactagaggaaaatcttctggtttgggagtatcagg---agccaagaaacaaataaaagtatccctccaattgagcgctggtg 48908786  T

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