View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_low_40 (Length: 243)
Name: NF21413_low_40
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 40953300 - 40953527
Alignment:
| Q |
1 |
ccgaaccaggcttcaccagaaaaacagaacgataaaaatcgattctaacatcaaaagaactaaacctgacacctagaaacctaatctgtttggtgatctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40953300 |
ccgaaccaggcttcaccagaaaaacagaacgataaaaatcgattctaacatcaaaagaactaaaccttacacctagaaacctaatctgtttggtgatctt |
40953399 |
T |
|
| Q |
101 |
attgcctttgatttcataaacactcttcttattctcaacacctgtcattaacatacatatcaaagactcccattgagtcctactcaatgaatcaccaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40953400 |
attgcctttgatttcataaacactcttcttattctcaacacctgtcattaacatacatatcaaagactcccattgagtcctactcaatgaatcaccaaca |
40953499 |
T |
|
| Q |
201 |
aaaaccactcttttcccacgaagatttt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
40953500 |
aaaaccactcttttcccacgaagatttt |
40953527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 39083757 - 39083656
Alignment:
| Q |
113 |
ttcataaacactcttcttattctcaacacctgtcattaacatacatatcaaagactcccattgagtcctactcaatgaatcaccaacaaaaaccactctt |
212 |
Q |
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||||||||||||| ||||| ||| ||||| ||||| |||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| || ||| |
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| T |
39083757 |
ttcataaacactcgacttatcctccacaccagtcatcaacatacaaatcaaagactcccattgagttctactcattgaatcaccaacaaaaacaaccctt |
39083658 |
T |
|
| Q |
213 |
tt |
214 |
Q |
| |
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|| |
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|
| T |
39083657 |
tt |
39083656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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