View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21413_low_42 (Length: 238)

Name: NF21413_low_42
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21413_low_42
NF21413_low_42
[»] chr6 (3 HSPs)
chr6 (1-221)||(7004054-7004276)
chr6 (131-201)||(31314519-31314589)
chr6 (123-169)||(17411099-17411145)
[»] chr5 (7 HSPs)
chr5 (127-202)||(1629899-1629976)
chr5 (127-221)||(13953348-13953443)
chr5 (127-205)||(41233062-41233141)
chr5 (127-207)||(13953290-13953369)
chr5 (123-202)||(29531872-29531951)
chr5 (94-200)||(13953484-13953590)
chr5 (127-199)||(26293562-26293634)
[»] chr3 (5 HSPs)
chr3 (127-197)||(44291378-44291448)
chr3 (127-190)||(9343187-9343250)
chr3 (127-190)||(9357861-9357924)
chr3 (127-207)||(44291427-44291508)
chr3 (127-202)||(50898851-50898924)
[»] chr4 (4 HSPs)
chr4 (132-202)||(22519373-22519444)
chr4 (98-202)||(31095077-31095182)
chr4 (127-215)||(49291264-49291353)
chr4 (120-181)||(42676823-42676884)
[»] chr7 (5 HSPs)
chr7 (100-169)||(28003334-28003403)
chr7 (127-201)||(12422360-12422434)
chr7 (127-221)||(18128342-18128437)
chr7 (123-169)||(32857805-32857850)
chr7 (127-201)||(41331150-41331224)
[»] chr1 (3 HSPs)
chr1 (128-201)||(16554431-16554504)
chr1 (127-202)||(29954959-29955034)
chr1 (105-169)||(46530392-46530456)
[»] chr8 (2 HSPs)
chr8 (130-201)||(3806856-3806928)
chr8 (127-207)||(2277214-2277295)
[»] chr2 (1 HSPs)
chr2 (127-202)||(42054024-42054100)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7004054 - 7004276
Alignment:
Q  1 ttagggcttgattatatttgaaattatttgtacaaaaaatattaattggaaattattattcttctaatattttttc-gactaaattgcacca-gaggttt 98  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| | |||||||    
T  7004054 ttagggcttgattatattggaaattatttgtactaaaaatattaattggaaattattattcttctaatatttttttagactaaattgcactaagaggttt 7004153  T
Q  99 tttaagttttatcgtaccattcaagtcatttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtctttaaattattta 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  7004154 tttaagttttatcgtaccattcaagtcatttaagttatttaaatgtaacaagttagtcctttaagtattttttgtatcacttatgtctttaagttattta 7004253  T
Q  199 attgcaacacttaaaccttgaat 221  Q
    ||||||||| ||||||| |||||    
T  7004254 attgcaacatttaaaccctgaat 7004276  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 31314519 - 31314589
Alignment:
Q  131 agttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtctttaaattatttaatt 201  Q
    |||||||||| | |||||||||  || ||||||| ||||| ||||||||||||| ||||| ||||||||||    
T  31314519 agttatttaattataacaagttgatcatttaagttttttcagtatcacttatgtttttaagttatttaatt 31314589  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 17411099 - 17411145
Alignment:
Q  123 gtcatttaagttatttaaatgtaacaagttactcctttaagtatttt 169  Q
    |||||||||||||||||| |||||||||||| || ||||| ||||||    
T  17411099 gtcatttaagttatttaattgtaacaagttagtcttttaaatatttt 17411145  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 1629976 - 1629899
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtc--tttaaattatttaattg 202  Q
    |||||||||||||| |||||||||||| || ||||| |||||| |||| ||||||||||  ||||| |||||||||||    
T  1629976 tttaagttatttaattgtaacaagttaatcttttaaatattttttgtaacacttatgtctttttaagttatttaattg 1629899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 13953348 - 13953443
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgt-ctttaaattatttaattgcaacacttaaaccttgaat 221  Q
    |||||||||||||| |||||||||||| || ||||||| |||| |||| || ||| || ||||||||||||||| || |||  ||| |||||||||    
T  13953348 tttaagttatttaattgtaacaagttagtcttttaagttttttgtgtaacatttaagtcctttaaattatttaactgtaacttttagaccttgaat 13953443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 41233141 - 41233062
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtc-tttaaattatttaattgcaa 205  Q
    |||||||| ||||| |||||||||||| || || ||||| |||  |||||||||||||| |||||||||||||| |||||    
T  41233141 tttaagttttttaattgtaacaagttaatctttaaagtaattttcgtatcacttatgtcatttaaattatttaaatgcaa 41233062  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 13953290 - 13953369
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtctttaaattatttaattgcaaca 207  Q
    ||||| |||||||| | ||| || |||||||||||||| |||| ||||||||||| || ||||| ||||||||||| ||||    
T  13953290 tttaaattatttaattataataaattactcctttaagtttttt-tgtatcacttacgtttttaagttatttaattgtaaca 13953369  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 29531872 - 29531951
Alignment:
Q  123 gtcatttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtc-tttaaattatttaattg 202  Q
    |||||||||||||||||| ||||| || ||| |||||||||| ||||| |||||| ||| ||| ||||| |||||||||||    
T  29531872 gtcatttaagttatttaattgtaataaattagtcctttaagttttttc-gtatcatttacgtcatttaagttatttaattg 29531951  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 13953590 - 13953484
Alignment:
Q  94 ggttttttaagttttatcgtaccattcaagtcatttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtc-tttaaat 192  Q
    ||||||||||||||| || ||||  | ||||||||||||||| |||| |||||||||||  || ||||||| ||||| ||| || ||| ||| ||||| |    
T  13953590 ggttttttaagttttttcataccgcttaagtcatttaagttaattaattgtaacaagtttgtcttttaagt-ttttccgtaccaattacgtcttttaagt 13953492  T
Q  193 tatttaat 200  Q
    ||||||||    
T  13953491 tatttaat 13953484  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 26293562 - 26293634
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtctttaaattatttaa 199  Q
    |||||||||||||| ||| | |||||  | |||||||| |||  ||||||||||| |||||||| ||||||||    
T  26293562 tttaagttatttaattgttataagttgatactttaagtttttattgtatcacttaggtctttaagttatttaa 26293634  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 44291448 - 44291378
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtctttaaattattt 197  Q
    |||||||||||||| |||||||||||| ||||||||||||| | |||| ||||||  ||||||| ||||||    
T  44291448 tttaagttatttaattgtaacaagttagtcctttaagtattgtttgtaacacttagatctttaagttattt 44291378  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 9343250 - 9343187
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtctttaa 190  Q
    |||||||||||||| | ||| |||||  ||||||||||||||| ||||||| ||| ||||||||    
T  9343250 tttaagttatttaattataataagttggtcctttaagtattttttgtatcatttaggtctttaa 9343187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 9357924 - 9357861
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtctttaa 190  Q
    |||||||||||||| | ||| |||||  ||||||||||||||| ||||||| ||| ||||||||    
T  9357924 tttaagttatttaattataataagttggtcctttaagtattttttgtatcatttaggtctttaa 9357861  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 44291508 - 44291427
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgt-ctttaaattatttaattgcaaca 207  Q
    |||||||||||||| |||||||| ||  |||| ||| | ||||  ||||||||||||| |||||| ||||||||||| ||||    
T  44291508 tttaagttatttaattgtaacaaattggtcctctaaatttttttagtatcacttatgtcctttaagttatttaattgtaaca 44291427  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 50898851 - 50898924
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtctttaaattatttaattg 202  Q
    ||||||||||||||||||||||| ||| |  ||||||||||||  ||| |||||| || ||||| || ||||||||    
T  50898851 tttaagttatttaaatgtaacaaattagt--tttaagtatttttcgtaacacttaggtatttaagttgtttaattg 50898924  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 22519373 - 22519444
Alignment:
Q  132 gttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgt-ctttaaattatttaattg 202  Q
    ||||||||| |||||||||||| |||||||||||||||  ||| |||||| || |||||| |||||||||||    
T  22519373 gttatttaattgtaacaagttagtcctttaagtatttttcgtaacacttaggtcctttaagttatttaattg 22519444  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 31095077 - 31095182
Alignment:
Q  98 ttttaagttttatcgtaccattcaagtcatttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatg-tctttaaattatt 196  Q
    ||||||||||| || || || | | ||| |||||||||||||| | |||||||||| || |||||||||| | |||| |||||| | ||||||| |||||    
T  31095077 ttttaagttttttcatatcacttacgtcctttaagttatttaattataacaagttaatcatttaagtattgtttgtaacacttaggttctttaagttatt 31095176  T
Q  197 taattg 202  Q
    ||||||    
T  31095177 taattg 31095182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 49291353 - 49291264
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtc-tttaaattatttaattgcaacacttaaacc 215  Q
    |||||||||||||| |||||||||||| || |||||||||||| | || || ||| ||| ||||| ||||||||||| |||  |||||||    
T  49291353 tttaagttatttaattgtaacaagttagtcatttaagtattttttataacatttaagtcttttaagttatttaattgtaacttttaaacc 49291264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 42676884 - 42676823
Alignment:
Q  120 caagtcatttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcactta 181  Q
    |||||| ||||||||| |||| |||||||||||| ||||||| || ||||  ||||||||||    
T  42676884 caagtcttttaagttaattaattgtaacaagttaatcctttatgtttttttcgtatcactta 42676823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 28003403 - 28003334
Alignment:
Q  100 ttaagttttatcgtaccattcaagtcatttaagttatttaaatgtaacaagttactcctttaagtatttt 169  Q
    ||||||||| |||||||| | | ||| ||||||||| ||||||||||||||||  |||||||||| ||||    
T  28003403 ttaagttttttcgtaccaattaggtcctttaagttaattaaatgtaacaagttgatcctttaagtttttt 28003334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 12422434 - 12422360
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtc-tttaaattatttaatt 201  Q
    |||||||||||||| |||||||| ||  |||||||||| |||| ||||||||||| ||| ||||| ||||||||||    
T  12422434 tttaagttatttaattgtaacaaattcatcctttaagt-ttttttgtatcacttacgtcttttaagttatttaatt 12422360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 18128342 - 18128437
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgt-ctttaaattatttaattgcaacacttaaaccttgaat 221  Q
    |||||||||||||| ||| |||| ||| ||||||||||||| |  ||| ||||||  | ||||||||| |||||||| |||  |||||||||||||    
T  18128342 tttaagttatttaattgtcacaaattaatcctttaagtattcttcgtaacacttagatcctttaaattttttaattgtaacttttaaaccttgaat 18128437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 32857805 - 32857850
Alignment:
Q  123 gtcatttaagttatttaaatgtaacaagttactcctttaagtatttt 169  Q
    |||||||||||||||||| |||||||||||| | |||||||||||||    
T  32857805 gtcatttaagttatttaattgtaacaagttagt-ctttaagtatttt 32857850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 41331150 - 41331224
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtctttaaattatttaatt 201  Q
    |||||||||||||| |||||||||||| |  ||||| ||||||   || |||||| |||||||| ||||||||||    
T  41331150 tttaagttatttaattgtaacaagttagtagtttaaatatttttcatagcacttaggtctttaagttatttaatt 41331224  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 16554504 - 16554431
Alignment:
Q  128 ttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtctttaaattatttaatt 201  Q
    ||||| ||||||| |||||||| ||| |||||||| ||||||  |||||| ||| || ||||||||||||||||    
T  16554504 ttaagatatttaattgtaacaatttagtcctttaaatatttttcgtatcatttaggtttttaaattatttaatt 16554431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 29955034 - 29954959
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgtctttaaattatttaattg 202  Q
    ||||||||| |||  |||| ||||||  ||||| |||||||||| ||| |||||| |||||||| |||||||||||    
T  29955034 tttaagttaattagttgtagcaagtttgtccttcaagtattttccgtaccacttaggtctttaagttatttaattg 29954959  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 46530456 - 46530392
Alignment:
Q  105 ttttatcgtaccattcaagtcatttaagttatttaaatgtaacaagttactcctttaagtatttt 169  Q
    |||| |||||||| ||| ||||||||||||| |||| |||||||||  | | |||||||||||||    
T  46530456 ttttttcgtaccactcacgtcatttaagttaattaattgtaacaagccagttctttaagtatttt 46530392  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 3806856 - 3806928
Alignment:
Q  130 aagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgt-ctttaaattatttaatt 201  Q
    ||||||||||| |||||||||||| || ||||||||||||  ||| |||||| || |||| ||||||||||||    
T  3806856 aagttatttaactgtaacaagttagtcatttaagtatttttcgtagcacttaggtccttttaattatttaatt 3806928  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 2277295 - 2277214
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatgt-ctttaaattatttaattgcaaca 207  Q
    |||||||||||||| |||||||| ||  |||||||||| |||| |||| |||||| || |||||| ||| ||||||| ||||    
T  2277295 tttaagttatttaattgtaacaaattgatcctttaagttttttttgtaccacttaggtcctttaagttaattaattgtaaca 2277214  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 42054024 - 42054100
Alignment:
Q  127 tttaagttatttaaatgtaacaagttactcctttaagtattttctgtatcacttatg-tctttaaattatttaattg 202  Q
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T  42054024 tttaagttgtttaattttaacaagttagtcctttaagtatttttcctatcacttaggttctttaagttatttaattg 42054100  T

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