View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21413_low_5 (Length: 554)

Name: NF21413_low_5
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21413_low_5
NF21413_low_5
[»] chr5 (3 HSPs)
chr5 (161-427)||(14233432-14233698)
chr5 (6-169)||(14233749-14233912)
chr5 (443-539)||(14233287-14233383)
[»] chr4 (9 HSPs)
chr4 (1-169)||(9880921-9881091)
chr4 (168-411)||(9880603-9880863)
chr4 (6-169)||(5706803-5706966)
chr4 (457-538)||(26904495-26904576)
chr4 (10-161)||(9238444-9238596)
chr4 (6-116)||(26905015-26905125)
chr4 (198-315)||(5721973-5722090)
chr4 (351-424)||(26904642-26904715)
chr4 (456-532)||(5722281-5722357)
[»] chr8 (4 HSPs)
chr8 (6-169)||(37786960-37787123)
chr8 (9-88)||(6414317-6414396)
chr8 (484-532)||(37787536-37787584)
chr8 (168-242)||(37787181-37787255)
[»] chr7 (10 HSPs)
chr7 (6-169)||(296707-296870)
chr7 (6-169)||(30380286-30380449)
chr7 (6-91)||(35898321-35898406)
chr7 (337-427)||(30379953-30380043)
chr7 (454-535)||(35897814-35897895)
chr7 (168-242)||(296575-296649)
chr7 (339-416)||(35897966-35898043)
chr7 (456-532)||(30379816-30379891)
chr7 (168-311)||(35898090-35898233)
chr7 (351-424)||(296385-296458)
[»] chr2 (9 HSPs)
chr2 (6-169)||(301972-302135)
chr2 (10-169)||(38099500-38099659)
chr2 (6-169)||(3461419-3461582)
chr2 (443-538)||(38100042-38100135)
chr2 (456-532)||(301500-301576)
chr2 (168-311)||(3461218-3461361)
chr2 (168-313)||(301769-301914)
chr2 (339-418)||(3461094-3461173)
chr2 (351-424)||(301641-301714)
[»] chr3 (6 HSPs)
chr3 (6-169)||(18641307-18641470)
chr3 (338-427)||(34982650-34982739)
chr3 (198-315)||(18645743-18645860)
chr3 (456-532)||(18646051-18646127)
chr3 (455-529)||(1662954-1663028)
chr3 (172-313)||(34982781-34982922)
[»] chr1 (5 HSPs)
chr1 (6-141)||(50778463-50778598)
chr1 (163-313)||(44536484-44536634)
chr1 (459-535)||(50778933-50779009)
chr1 (351-424)||(44536689-44536762)
chr1 (456-532)||(44536827-44536903)
[»] scaffold0038 (3 HSPs)
scaffold0038 (6-165)||(48960-49119)
scaffold0038 (168-313)||(48753-48898)
scaffold0038 (461-535)||(48481-48555)
[»] chr6 (3 HSPs)
chr6 (6-165)||(28248798-28248957)
chr6 (168-313)||(28248591-28248736)
chr6 (461-535)||(28248319-28248393)
[»] scaffold1064 (1 HSPs)
scaffold1064 (58-161)||(2420-2523)
[»] scaffold0217 (1 HSPs)
scaffold0217 (37-89)||(2844-2896)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 161 - 427
Target Start/End: Complemental strand, 14233698 - 14233432
Alignment:
Q  161 tcactgaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaa 260  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14233698 tcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaa 14233599  T
Q  261 tcaaatctccacaccagtcactatttgagtaaactataagctcattcacttcaataacaaaccaaatttcacatattacccttgatgtaactaaggattc 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14233598 tcaaatctccacaccagtcactatttgagtaaactataagctcattcacttcaataacaaaccaaatttcacatattacccttgatgtaactaaggattc 14233499  T
Q  361 tcttagcaactataaaatgagatttccttggatcatgcataaattttctaattacactaactgaata 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14233498 tcttagcaactataaaatgagatttccttggatcatgcataaattttctaattacactaactgaata 14233432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 14233912 - 14233749
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14233912 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 14233813  T
Q  106 ttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaat 169  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14233812 ttgttgtcaattctgagggttagaggcttcactacttcacatttaagctccttcatcactgaat 14233749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 443 - 539
Target Start/End: Complemental strand, 14233383 - 14233287
Alignment:
Q  443 ttgtttaaagtttgttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttt 539  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14233383 ttgtctaaagtttgttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagcttttt 14233287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 9881091 - 9880921
Alignment:
Q  1 tcatccattccattagtcacctgctccctaatgaaatggaatctg-gtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatg 99  Q
    |||| |||||||||||||| |||||||||||| ||||||||| |  ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||    
T  9881091 tcattcattccattagtcatctgctccctaataaaatggaattttagtctctatgtgcttgcttctaccatgtgagatgggattcttagcaagacttatg 9880992  T
Q  100 gaagattt-gttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaat 169  Q
    | |||||| |||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||||    
T  9880991 gtagattttgttgtcaattatgagggttagaggcttcacaatttcacatttaagctctttcatcactgaat 9880921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 168 - 411
Target Start/End: Complemental strand, 9880863 - 9880603
Alignment:
Q  168 atgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatc 267  Q
    |||||||| |||||| | ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  9880863 atgagagtacagtaactagttgcttcttggtgtaccaggatatggaagaatcattgaacttgaaaacatagcctgaggtgcttcttctgtcagtcaaatc 9880764  T
Q  268 tccacaccagtcactatttgagtaaactataagctcattcacttc-------------------aataacaaaccaaatttcacatattacccttgatgt 348  Q
    ||||||||| ||||| |  |||||| |||||| |||||||| |||                   | || |||||||||||   |||||||||||||||||    
T  9880763 tccacaccaatcactgtcagagtaacctataaactcattcaattcacttttacttccattagggattagcaaaccaaatt--ccatattacccttgatgt 9880666  T
Q  349 aactaaggattctcttagcaactataaaatgagatttccttggatcatgcataaattttctaa 411  Q
    | |||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| ||||    
T  9880665 atctaaggattctcttagcagctatcaaatgagatttccatggatcatgcataaatttgctaa 9880603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 5706966 - 5706803
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| | ||| || ||||| ||||| |||| |||| |||||||||| |||||||| |||    
T  5706966 cattccattagtcacttgctccctaatgaaatggaatctggtctctaagtgtttacttctgccatgagagacaggactcttagcaagacttatggatgat 5706867  T
Q  106 ttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaat 169  Q
    |||||||||||  | || || |||||||| | ||||||||| || ||||| |||||||||||||    
T  5706866 ttgttgtcaatcttcagtgtcagaggctttatcacttcacacttgagctctttcatcactgaat 5706803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 457 - 538
Target Start/End: Complemental strand, 26904576 - 26904495
Alignment:
Q  457 ttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagctttt 538  Q
    ||||||| |||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  26904576 ttgaatcaactttctcttcttcactgcactcatctagctttgggtatgtttctgatggatttgagactgaattgcagctttt 26904495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 9238444 - 9238596
Alignment:
Q  10 ccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgt 109  Q
    |||||||||||||||| || ||||||| | ||||| |||||||| || |||||||||||||| ||||| ||||||||  |||| |||||||  || ||||    
T  9238444 ccattagtcacctgcttccaaatgaaacgaaatctagtctcaatatgtttgcttctaccatgagagatgggattcttgacaagacttatggctgacttgt 9238543  T
Q  110 tgtcaattctgagggtt-agaggcttcaccacttcacatttaagctccttcat 161  Q
    |||||||||| || ||| |||||||||| ||||||||| |||| ||| |||||    
T  9238544 tgtcaattctcagtgttaagaggcttcatcacttcacacttaatctctttcat 9238596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 26905125 - 26905015
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    |||| ||||| ||| |||||||| |||||| |||||||| ||||||||||| |||||| ||||||| || ||||| ||||||||||| |||||||  |||    
T  26905125 catttcattattcatctgctccccaatgaagtggaatctagtctcaatgtgtttgcttataccatgagaaatagggttcttagcaagacttatggctgat 26905026  T
Q  106 ttgttgtcaat 116  Q
    |||||||||||    
T  26905025 ttgttgtcaat 26905015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 5721973 - 5722090
Alignment:
Q  198 tgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactat 297  Q
    |||||||||| || | |||||||||||| ||||| ||||| |||    ||||||| || ||||| | |||||||||||| ||||| | ||| ||| ||||    
T  5721973 tgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccacaccaatcactgtctgaataacctat 5722072  T
Q  298 aagctcattcacttcaat 315  Q
     |||||||||||||||||    
T  5722073 gagctcattcacttcaat 5722090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 26904715 - 26904642
Alignment:
Q  351 ctaaggattctcttagcaactataaaatgagatttccttggatcatgcataaattttctaattacactaactga 424  Q
    ||||| || |||||||||||||| | ||||| |||||| ||||||||||| ||||| ||||| |||||||||||    
T  26904715 ctaagaatcctcttagcaactatcacatgaggtttcctaggatcatgcatgaatttgctaatcacactaactga 26904642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 532
Target Start/End: Original strand, 5722281 - 5722357
Alignment:
Q  456 gttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgca 532  Q
    |||||||| ||||| |||||||   || ||||||||||||||||||| |||| |||||||||| | |||||||||||    
T  5722281 gttgaatctactttttcttctttgttgcactcatctagctttgagttagtttctgatggatttaaaactgaattgca 5722357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 6 - 169
Target Start/End: Original strand, 37786960 - 37787123
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||||||||| || ||||| ||||||||||| |||||||| ||||| |||||||  |||    
T  37786960 cattccattagtcacttgctctctaatgaaatggaatatggtctcaatgtgtttacttctgccatgtgagattggattctttgcaagacttatggctgat 37787059  T
Q  106 ttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaat 169  Q
    |||||||||||| | || ||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  37787060 ttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagttccttcatcactgaat 37787123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 6414396 - 6414317
Alignment:
Q  9 tccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttag 88  Q
    ||||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||  ||||| ||||| ||||||||||    
T  6414396 tccattagtcacctgctccctaatgaaatagaatctagtcccaatgtgtttgcttccgccatgagagatgggattcttag 6414317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 37787536 - 37787584
Alignment:
Q  484 actcatctagctttgagtttgtttatgatggatttgagactgaattgca 532  Q
    ||||| ||||||||||||| ||||||||||||||||| |||||||||||    
T  37787536 actcagctagctttgagttagtttatgatggatttgaaactgaattgca 37787584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 37787181 - 37787255
Alignment:
Q  168 atgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctg 242  Q
    |||||||| | || ||||||||||||||| ||||| |||| || | |||||||||||| ||||| ||||| ||||    
T  37787181 atgagagtcctgtgattggttgcttcttggtgcactaggagattgcagcatcattgaatttgaacacataacctg 37787255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 296870 - 296707
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||| ||||  |||||||||||||| |||||||  |||    
T  296870 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgtttacttttgccatgagagacgggattcttagcaagacttatggctgat 296771  T
Q  106 ttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaat 169  Q
    |||||||||||  | || || |||||||||| ||||||||| || ||||| || ||||||||||    
T  296770 ttgttgtcaatcttcagtgtcagaggcttcatcacttcacacttgagctcttttatcactgaat 296707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 30380449 - 30380286
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| | ||||||||||| ||||||| |||||| |||||||  |||    
T  30380449 cattccattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttacttttgccatgtgagattggattctaagcaagacttatggctgat 30380350  T
Q  106 ttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaat 169  Q
    |||||||||||    || |||||||| |||| ||||||||| || ||||| |||||||||||||    
T  30380349 ttgttgtcaatctccagtgttagaggtttcatcacttcacacttgagctctttcatcactgaat 30380286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 35898406 - 35898321
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaa 91  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| || || || |||||||| || |||||||| ||||    
T  35898406 cattccattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttactcctgccatgtgatattggattctttgcaa 35898321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 337 - 427
Target Start/End: Complemental strand, 30380043 - 30379953
Alignment:
Q  337 tacccttgatgtaactaaggattctcttagcaactataaaatgagatttccttggatcatgcataaattttctaattacactaactgaata 427  Q
    ||||||| ||||| ||||||| |||||| ||| |||| |||||||||||| |||||||||||||||| || || |||||||||||||||||    
T  30380043 tacccttaatgtatctaaggagtctctttgcagctatcaaatgagatttctttggatcatgcataaacttgcttattacactaactgaata 30379953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 535
Target Start/End: Complemental strand, 35897895 - 35897814
Alignment:
Q  454 ttgttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagct 535  Q
    |||| ||||||||||| ||||||||| |  ||||||| |||||||||||||| | |||||||||||| |||| |||||||||    
T  35897895 ttgtggaatccactttttcttcttcaatacactcatccagctttgagtttgtctctgatggatttgaaactgtattgcagct 35897814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 296649 - 296575
Alignment:
Q  168 atgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctg 242  Q
    |||||||||| || ||||||||||||||| |||||||||| || | |||||||||||| ||||| ||||| ||||    
T  296649 atgagagtgcggtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctg 296575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 35898043 - 35897966
Alignment:
Q  339 cccttgatgtaactaaggattctcttagcaactataaaatgagatttccttggatcatgcataaattttctaattaca 416  Q
    ||||| ||||| ||||| || ||||| ||| |||| | |||||||||||||||||||||||| || || |||||||||    
T  35898043 ccctttatgtatctaagaatcctctttgcagctatcagatgagatttccttggatcatgcatgaacttgctaattaca 35897966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 532
Target Start/End: Complemental strand, 30379891 - 30379816
Alignment:
Q  456 gttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgca 532  Q
    ||||| |||||||| |||||||||||| | ||| | ||||| |||||||||| ||||||||| |||| |||||||||    
T  30379891 gttgattccacttt-tcttcttcactgcattcaacaagcttcgagtttgtttctgatggattagagattgaattgca 30379816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 311
Target Start/End: Complemental strand, 35898233 - 35898090
Alignment:
Q  168 atgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatc 267  Q
    ||||||||||||| | ||||||||||||  ||||||| || || | |||||||||||| ||||| ||||| ||||   || |||| || ||| | |  ||    
T  35898233 atgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaacacataacctgaagtgtttctcctatcagttaggtc 35898134  T
Q  268 tccacaccagtcactatttgagtaaactataagctcattcactt 311  Q
    ||||||||| |||||||  |||||  |||| || ||||||||||    
T  35898133 tccacaccaatcactatcagagtatcctatgagttcattcactt 35898090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 296458 - 296385
Alignment:
Q  351 ctaaggattctcttagcaactataaaatgagatttccttggatcatgcataaattttctaattacactaactga 424  Q
    |||||||| || |||||| |||| | ||||| |||||| ||||||||||| ||||| ||||| ||||| |||||    
T  296458 ctaaggatcctattagcagctatcagatgaggtttcctaggatcatgcatgaatttgctaatcacacttactga 296385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 302135 - 301972
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||||| || || || |||||||||||  ||||||| ||||| ||| |||  |||    
T  302135 cattccattagtcacctgctctcaaatgaaattgaatctggtctcaatgtgtttactcctgccatgtgagattagattctttgcaagacttgtggctgat 302036  T
Q  106 ttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaat 169  Q
    |||||||||||| | || ||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  302035 ttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagttccttcatcactgaat 301972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 38099500 - 38099659
Alignment:
Q  10 ccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgt 109  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||| ||| |||||||||| || ||||||||| ||||||| |||||||  |||||||    
T  38099500 ccattagtcactcgctccctaatgaaatggaatctagtctcaatgtgtttgattctaccatgagaaataggattcctagcaagacttatggttgatttgt 38099599  T
Q  110 tgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaat 169  Q
    |||||||  | || |||||||| |||| ||||||||| || ||||| ||||||| |||||    
T  38099600 tgtcaatcttcagtgttagaggtttcatcacttcacacttgagctctttcatcattgaat 38099659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 3461582 - 3461419
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| || || || |||||| |||| ||||||||  |||| |||||||  |||    
T  3461582 cattccattagtcacatgctctctaataaaatggaatatggtctcaatgtgtttactcctgccatgtaagattggattctttacaagacttatggctgat 3461483  T
Q  106 ttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaat 169  Q
    || || |||||| | || ||||||||||||| ||||||||| ||||  ||||||||||||||||    
T  3461482 ttattatcaattttcagtgttagaggcttcatcacttcacacttaaattccttcatcactgaat 3461419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 443 - 538
Target Start/End: Original strand, 38100042 - 38100135
Alignment:
Q  443 ttgtttaaagtttgttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagctttt 538  Q
    |||||| ||| | |||||||||| |||||||||||||||| ||||||||| |||  ||||||||| |||||||||||||||||||||||| |||||    
T  38100042 ttgtttgaagctagttgaatccaatttctcttcttcactgcactcatctaactt--agtttgtttctgatggatttgagactgaattgcaactttt 38100135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 456 - 532
Target Start/End: Complemental strand, 301576 - 301500
Alignment:
Q  456 gttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgca 532  Q
    |||||| | ||||| |||||||  ||| ||||||||||||||||||| |||| |||||||||||| |||||||||||    
T  301576 gttgaagctactttttcttctttgctgcactcatctagctttgagttagtttctgatggatttgaaactgaattgca 301500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 311
Target Start/End: Complemental strand, 3461361 - 3461218
Alignment:
Q  168 atgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatc 267  Q
    ||||||||||||| | ||||||||||||  ||||||| || || | |||||||||||| ||||| ||||| ||||   ||||||| || ||| |||  ||    
T  3461361 atgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatcagtcaggtc 3461262  T
Q  268 tccacaccagtcactatttgagtaaactataagctcattcactt 311  Q
    ||||||||| |||||||  |||||   ||| |||||||||||||    
T  3461261 tccacaccaatcactatcagagtatcatatgagctcattcactt 3461218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 313
Target Start/End: Complemental strand, 301914 - 301769
Alignment:
Q  168 atgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatc 267  Q
    ||||||||||| | | ||||||||||||| ||||||| || || | |||||||||||| ||||| |||||  |||   ||||||| || ||||| | |||    
T  301914 atgagagtgcattgactggttgcttcttggtgcaccaagagattgcagcatcattgaatttgaacacataatctgaagtgcttctcctatcaattagatc 301815  T
Q  268 tccacaccagtcactatttgagtaaactataagctcattcacttca 313  Q
    ||||||||| ||| | | ||| ||| |||| || ||||||||||||    
T  301814 tccacaccaatcattgtctgaataacctatgaggtcattcacttca 301769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 3461173 - 3461094
Alignment:
Q  339 cccttgatgtaactaaggattctcttagcaactataaaatgagatttccttggatcatgcataaattttctaattacact 418  Q
    ||||| ||||| ||||| || ||||| ||| |||| | |||||||||||||||||||||||| || || |||||||||||    
T  3461173 ccctttatgtatctaagaatcctctttgcagctatcatatgagatttccttggatcatgcatgaacttgctaattacact 3461094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 301714 - 301641
Alignment:
Q  351 ctaaggattctcttagcaactataaaatgagatttccttggatcatgcataaattttctaattacactaactga 424  Q
    |||||||| ||||||||| |||| | |||||  ||||| ||||||||||| ||||| ||||| ||||| |||||    
T  301714 ctaaggatcctcttagcagctatcagatgagtgttcctaggatcatgcatgaatttgctaatcacacttactga 301641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 6 - 169
Target Start/End: Original strand, 18641307 - 18641470
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| | ||| || ||||| ||||| |||| |||| |||||||||| |||||||| |||    
T  18641307 cattccattagtcacttgctccctaatgaaatggaatctggtctctaagtgtttacttctgccatgagagacaggactcttagcaagacttatggatgat 18641406  T
Q  106 ttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaat 169  Q
    |||||||||||  | || || |||||||| | ||||||||| || ||||| |||||||||||||    
T  18641407 ttgttgtcaatcttcagtgtcagaggctttatcacttcacacttgagctctttcatcactgaat 18641470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 338 - 427
Target Start/End: Complemental strand, 34982739 - 34982650
Alignment:
Q  338 acccttgatgtaactaaggattctcttagcaactataaaatgagatttccttggatcatgcataaattttctaattacactaactgaata 427  Q
    ||||| ||||||  || |||||||||| ||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  34982739 accctcgatgtatttagggattctctttgcagctatcaaatgagatttccttggatcatgcataaacttgctaattacactaactgaata 34982650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 18645743 - 18645860
Alignment:
Q  198 tgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctccacaccagtcactatttgagtaaactat 297  Q
    |||||||||| || | |||||||||||| ||||| ||||| |||    ||||||| || ||||| | |||||||||||| ||||| | ||| ||| ||||    
T  18645743 tgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccacaccaatcactgtctgaataacctat 18645842  T
Q  298 aagctcattcacttcaat 315  Q
     |||||||||||||||||    
T  18645843 gagctcattcacttcaat 18645860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 532
Target Start/End: Original strand, 18646051 - 18646127
Alignment:
Q  456 gttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgca 532  Q
    |||||||| ||||| |||||||   || ||||||||||||||||||| |||| |||||||||| | |||||||||||    
T  18646051 gttgaatctactttttcttctttgttgcactcatctagctttgagttagtttctgatggatttaaaactgaattgca 18646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 529
Target Start/End: Complemental strand, 1663028 - 1662954
Alignment:
Q  455 tgttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaatt 529  Q
    |||||||||||||||||||| |||| || | ||||||| |||| |||| || | |||||||||||||| ||||||    
T  1663028 tgttgaatccactttctcttattcattgcattcatctaacttttagttagtctctgatggatttgagattgaatt 1662954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 313
Target Start/End: Complemental strand, 34982922 - 34982781
Alignment:
Q  172 gagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatctcca 271  Q
    ||||||||| | | ||||||||||| | ||||| || || | || ||||||||| ||||| ||||||||||   ||||  |||| ||  | | |||||||    
T  34982922 gagtgcagtgactagttgcttcttggtacaccatgaaattgcagtatcattgaatttgaacacatagcctgatgtgctctttctatcggttagatctcca 34982823  T
Q  272 caccagtcactatttgagtaaactataagctcattcacttca 313  Q
    ||||| ||||||| ||||||| |||| |||||||| ||||||    
T  34982822 caccaatcactatctgagtaacctatgagctcattaacttca 34982781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 50778463 - 50778598
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||| |||||||  |||    
T  50778463 cattcaattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttactcctgccatgtgagattggattctttgcaagacttatggctgat 50778562  T
Q  106 ttgttgtcaattctgagggttagaggcttcaccact 141  Q
    || || |||||| | || ||||||||||||| ||||    
T  50778563 ttattatcaattttcagtgttagaggcttcatcact 50778598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 313
Target Start/End: Original strand, 44536484 - 44536634
Alignment:
Q  163 actgaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatc 262  Q
    |||| ||||||| ||||| ||||||||||||||| |||||||||| || | |||||||||||| ||||| ||||| ||||   ||||||| || |||||     
T  44536484 actggatgagagcgcagtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatcaatt 44536583  T
Q  263 aaatctccacaccagtcactatttgagtaaactataagctcattcacttca 313  Q
    | |||||||||||| ||||| | ||| ||  |||| |||||||||||||||    
T  44536584 agatctccacaccaatcactgtctgaatatcctatgagctcattcacttca 44536634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 535
Target Start/End: Original strand, 50778933 - 50779009
Alignment:
Q  459 gaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagct 535  Q
    ||||||||||| ||||| ||| || ||||||| | |||||||||||| | |||||||||||| |||| |||||||||    
T  50778933 gaatccactttttcttcatcagtgcactcatccaactttgagtttgtctctgatggatttgaaactgtattgcagct 50779009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 424
Target Start/End: Original strand, 44536689 - 44536762
Alignment:
Q  351 ctaaggattctcttagcaactataaaatgagatttccttggatcatgcataaattttctaattacactaactga 424  Q
    |||||||| ||||||||| |||| | ||||| |||||| ||||||||||| ||||| ||||| ||||| |||||    
T  44536689 ctaaggatcctcttagcagctatcagatgaggtttcctaggatcatgcatgaatttgctaatcacacttactga 44536762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 532
Target Start/End: Original strand, 44536827 - 44536903
Alignment:
Q  456 gttgaatccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgca 532  Q
    |||||||| ||||| |||| ||  ||| |||||||||| |||||||| |||| |||||||||||| ||| |||||||    
T  44536827 gttgaatctactttttcttgtttgctgcactcatctagatttgagttagtttctgatggatttgaaacttaattgca 44536903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 6 - 165
Target Start/End: Complemental strand, 49119 - 48960
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    ||||||||||||||| ||||| |||||||||||||||||||||  |||||| || ||||| ||||| |||| |  |||||||||||| ||||||   |||    
T  49119 cattccattagtcacatgctctctaatgaaatggaatctggtcgaaatgtgtttacttctgccatgagagacaatattcttagcaagacttatgcctgat 49020  T
Q  106 ttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcact 165  Q
    |||||||||||  | || || |||||||| ||||||||||| || ||||| |||||||||    
T  49019 ttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagctctttcatcact 48960  T

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Target: scaffold0038; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 313
Target Start/End: Complemental strand, 48898 - 48753
Alignment:
Q  168 atgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatc 267  Q
    |||| |||||||| | ||||||||||||| ||||||| || || | |||||||||||| ||||| ||||| | ||   || |||| || ||||| | |||    
T  48898 atgaaagtgcagtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaacacataacttgaagtgtttctcctatcaattagatc 48799  T
Q  268 tccacaccagtcactatttgagtaaactataagctcattcacttca 313  Q
    ||||||||| ||||| | ||| ||| |||| |||||||||||||||    
T  48798 tccacaccaatcactgtctgaataacctatgagctcattcacttca 48753  T

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Target: scaffold0038; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 535
Target Start/End: Complemental strand, 48555 - 48481
Alignment:
Q  461 atccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagct 535  Q
    ||||||||| ||||||||| || ||||||| || ||||||||||| | ||| |||||||| |||| |||||||||    
T  48555 atccactttttcttcttcaatgcactcatccagatttgagtttgtctctgaaggatttgaaactgtattgcagct 48481  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 6 - 165
Target Start/End: Complemental strand, 28248957 - 28248798
Alignment:
Q  6 cattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagat 105  Q
    ||||||||||||||| ||||| |||||||||||||||||||||  |||||| || ||||| ||||| |||| |  |||||||||||| ||||||   |||    
T  28248957 cattccattagtcacatgctctctaatgaaatggaatctggtcgaaatgtgtttacttctgccatgagagacaatattcttagcaagacttatgcctgat 28248858  T
Q  106 ttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcact 165  Q
    |||||||||||  | || || |||||||| ||||||||||| || ||||| |||||||||    
T  28248857 ttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagctctttcatcact 28248798  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 313
Target Start/End: Complemental strand, 28248736 - 28248591
Alignment:
Q  168 atgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagcatcattgaacttgaaaacatagcctgggatgcttcttctgtcaatcaaatc 267  Q
    |||| |||||||| | ||||||||||||| ||||||| || || | |||||||||||| ||||| ||||| | ||   || |||| || ||||| | |||    
T  28248736 atgaaagtgcagtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaacacataacttgaagtgtttctcctatcaattagatc 28248637  T
Q  268 tccacaccagtcactatttgagtaaactataagctcattcacttca 313  Q
    ||||||||| ||||| | ||| ||| |||| |||||||||||||||    
T  28248636 tccacaccaatcactgtctgaataacctatgagctcattcacttca 28248591  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 535
Target Start/End: Complemental strand, 28248393 - 28248319
Alignment:
Q  461 atccactttctcttcttcactgtactcatctagctttgagtttgtttatgatggatttgagactgaattgcagct 535  Q
    ||||||||| ||||||||| || ||||||| || ||||||||||| | ||| |||||||| |||| |||||||||    
T  28248393 atccactttttcttcttcaatgcactcatccagatttgagtttgtctctgaaggatttgaaactgtattgcagct 28248319  T

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Target: scaffold1064 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 2420 - 2523
Alignment:
Q  58 ttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctcct 157  Q
    |||||||||||||| ||||| ||||||||  ||||||||||||  || |||||||||||||| |  ||||||||||||| ||||||||| |||||||| |    
T  2420 ttgcttctaccatgagagatgggattcttgacaaggcttatggctgacttgttgtcaattctcaatgttagaggcttcatcacttcacacttaagctctt 2519  T
Q  158 tcat 161  Q
    ||||    
T  2520 tcat 2523  T

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Target: scaffold0217 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 2896 - 2844
Alignment:
Q  37 tggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagc 89  Q
    |||||||| ||||||||||| |||||| |||||||||  |||||||| |||||    
T  2896 tggaatctagtctcaatgtgtttgcttttaccatgtgcaataggatttttagc 2844  T

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