View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_low_6 (Length: 549)
Name: NF21413_low_6
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 8 - 531
Target Start/End: Original strand, 30089830 - 30090353
Alignment:
| Q |
8 |
gtcgaagaatatacttcttgacgcaaatcttgaggcaaggatagcagatttcggattagccaagatgatggttcggaagaatgaaacagtctccatgatt |
107 |
Q |
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| T |
30089830 |
gtcgaataatatacttcttgacgcaaatcttgaggcaaggatagcagatttcggattagccaagatgatggttcggaagaatgaaacagtctccatgatt |
30089929 |
T |
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| Q |
108 |
gccggatcctatggatacattgcccctggtgagttactccttacaatactgactatttttatttttgcagggtaagcaatgtttcttcattgtccgattt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30089930 |
gccggatcctatggatacattgcccctggtgagttactccttacaatactgactatttttatttttgcagggtaagcaatgtttcttcattgttcgattt |
30090029 |
T |
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| Q |
208 |
aaaatattcacatatctaaccatttcaatgctttactattttggcagaatatggatactccttgaaggtagatgaaaggattgacatttacagcttcgga |
307 |
Q |
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| T |
30090030 |
aaaatattcacatttctaaccatttcaatgctttactattttggcagaatatggatactccttgaaggtagatgaaaagattgacatttacagctttgga |
30090129 |
T |
|
| Q |
308 |
atagttcttttggagcttattacaggaaagcggcctatagatccggactttggagaatctgtagacattgtagggtggattagaaggaagatagacaaaa |
407 |
Q |
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| T |
30090130 |
atagttcttttggagcttattacaggaaagcggcctatagatccggactttggagagtctgtagacattgtagggtggattagaaggaagatagacaaaa |
30090229 |
T |
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| Q |
408 |
attctccagaagaggcgttagatccaagtgtaggaaactgtaagcatgttcaagaagagatgcttttagttctcagaatagcacttctttgcactgctaa |
507 |
Q |
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| T |
30090230 |
attctccagaagaggcgttagatccaagtgtaggaaactgtaagcatgttcaagaagagatgcttttagttctcagaatagcacttctttgcactgctaa |
30090329 |
T |
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| Q |
508 |
gctacctaaggaaagaccctccat |
531 |
Q |
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| T |
30090330 |
gctacctaaggaaagaccctccat |
30090353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 35781381 - 35781308
Alignment:
| Q |
18 |
atacttcttgacgcaaatcttgaggcaaggatagcagatttcggattagccaagatgatggttcggaagaatga |
91 |
Q |
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| T |
35781381 |
atactccttgacgcaaatttggaggcaaggatagcagatttcggtttggcgaggatgatgattcaaaagaatga |
35781308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 251 - 525
Target Start/End: Complemental strand, 39467645 - 39467368
Alignment:
| Q |
251 |
gcagaatatggatactccttgaaggtagatgaaaggattgacatttacagcttcggaatagttcttttggagcttattacaggaaagcggcctatagatc |
350 |
Q |
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| T |
39467645 |
gcagaatacggatatgcattgaaggttgatgaaaagattgatgtatacagttatggagtagttttattggagcttgtcacaggaaagaggccattagatt |
39467546 |
T |
|
| Q |
351 |
cggactttggagaatctgtagacattgtagggtggattagaaggaagat---agacaaaaattctccagaagaggcgttagatccaagtgtaggaaactg |
447 |
Q |
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| T |
39467545 |
cagaatttggagaaagtgtagacattgtagagtggattagaaggaaaattagagaaaacaaatctctagaagaagcattagatccaagtgtaggaaactg |
39467446 |
T |
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| Q |
448 |
taagcatgttcaagaagagatgcttttagttctcagaatagcacttctttgcactgctaagctacctaaggaaagacc |
525 |
Q |
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| T |
39467445 |
cagacatgttatagaagagatgcttctagttttaagaatagcagttgtttgcactgctaagcttccaaaggaaagacc |
39467368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 39468111 - 39467981
Alignment:
| Q |
15 |
aatatacttcttgacgcaaatcttgaggcaaggatagcagatttcggattagccaagatgatggttcggaagaatgaaacagtctccatgattgccggat |
114 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | | |||||| |||||||| |||||| ||||||||| |
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| T |
39468111 |
aatatactgcttgatgcaaatcttgaggcaaggatagcagatttcgggttagccaagatgatgatccagaagaacgaaacagtatccatggttgccggat |
39468012 |
T |
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| Q |
115 |
cctatggatacattgcccctggtgagttact |
145 |
Q |
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||||||| ||||| || |||||| ||||||| |
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| T |
39468011 |
cctatggctacatcgctcctggtaagttact |
39467981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 477
Target Start/End: Complemental strand, 5264413 - 5264298
Alignment:
| Q |
362 |
gaatctgtagacattgtagggtggattagaaggaagatagacaaaaattctccagaagaggcgttaga-tccaagtgtaggaaactgtaagcatgttcaa |
460 |
Q |
| |
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|||||| || ||||||||| || ||||| |||| |||||||||| | |||||| ||||||| ||||| ||||| | ||| ||||| |||||||||||| |
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| T |
5264413 |
gaatctataaacattgtagagtagattaaaaggtagatagacaatacatctccaaaagaggcattagactccaatt-tagaaaactacaagcatgttcaa |
5264315 |
T |
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| Q |
461 |
gaagagatgcttttagt |
477 |
Q |
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| T |
5264314 |
ggagagatgcttttagt |
5264298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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