View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21413_low_8 (Length: 531)
Name: NF21413_low_8
Description: NF21413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21413_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 308 - 514
Target Start/End: Original strand, 4682857 - 4683063
Alignment:
| Q |
308 |
aaggagaatccacagaatcataaagatagtccatatatcttataagcaagacttctagtctaaagaaatctaatggagtttaaatatcatgtgactaaaa |
407 |
Q |
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| T |
4682857 |
aaggaaaatccacagaatcataaagatagtccatatatcttataagcaagacttctagtctaaagaaatctaatggagtttaaatatcatgtgactaaaa |
4682956 |
T |
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| Q |
408 |
tggcatcaagtatttacagtgtgtaaaattccagcacagtgacaaataaatttgaagtataaattagctttcactaaatgtaaataaaaagttttaagga |
507 |
Q |
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| T |
4682957 |
tggcatcaagtatttacagtgtgtaaaattccagcacagtgacaaataaatttgaagtataaattagctttcactaaatgtaaataaaaagttttaagga |
4683056 |
T |
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| Q |
508 |
taagtct |
514 |
Q |
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| T |
4683057 |
taagtct |
4683063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 4682394 - 4682200
Alignment:
| Q |
8 |
tagtgaagttcggttcaaagttcaaccggttgaacatttggttcaatttgtaaaacacttttttacaaagaggtgaaaattaattttaacagaattgatt |
107 |
Q |
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| T |
4682394 |
tagtgatgtttggttgaaagttcaaccggttgaacatttgattcaatttctaaaacatttttctacaaagaggtgaaaattaattttaacagaattaatt |
4682295 |
T |
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| Q |
108 |
ttcgttataaacaagtttaacgaaattggtgtatgtttaaatatattaacataaaaatgattctcatcaatttatgttctttattagaatcaaaa |
202 |
Q |
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| T |
4682294 |
ttccttaaaaacaagtttaacgaaattggtgtatgtttggatagattaacataaaaatgattctcatcaatttatgttctttattagaataaaaa |
4682200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 202 - 321
Target Start/End: Original strand, 4682519 - 4682640
Alignment:
| Q |
202 |
accaacatacca--atatgattgatctgggtaacatgagagtaaacactttaaacaagtggaaagagatttgatcactcactcttgcatggaagaaatct |
299 |
Q |
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| T |
4682519 |
accaacataccacaatatgattgatctgggtaacatgagagtaaacactttaaacaagtggaaagagatttgatcactcactcttgcatggaagaaatct |
4682618 |
T |
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| Q |
300 |
ggttagaaaaggagaatccaca |
321 |
Q |
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| T |
4682619 |
ggttagaagaggagaattcaca |
4682640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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