View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21414_high_1_N (Length: 488)
Name: NF21414_high_1_N
Description: NF21414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21414_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 374
Target Start/End: Original strand, 39581760 - 39582118
Alignment:
| Q |
15 |
atcagaaatttgtggttccaatagacaatatatgtttttaggtaatataattaatttatatataacacgttcagtatcagtaacgttgatatcttatcca |
114 |
Q |
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| T |
39581760 |
atcagaaatttgtggttccaatagacaatatatgtttttaggtaatataattaatttatatataacacgttcagtatcagtaacgttgatatcttatcca |
39581859 |
T |
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| Q |
115 |
caactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaagaaaattactaaaatgatacagtgttgaattgc |
214 |
Q |
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| T |
39581860 |
caactgatgaagtatatgtcttggtcatcgtatccaagtgaggcgaactgtaatgatgagaattgaagaaaattactaaaatgatacagtgttgaattgc |
39581959 |
T |
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| Q |
215 |
cattggggagagagttcaaaattgtgtttgtttgaatgatcttttaatctttgattgcaaatcttagacgtagggaatgggagaagtgaaggagaaccaa |
314 |
Q |
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| T |
39581960 |
cgttggggagagaattc-aaattgtgtttgtttgaatgatcttttaatctttgattgcaaatcttagaagtagggaatgggagaagtgaaggagaaccaa |
39582058 |
T |
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| Q |
315 |
tgaagaagacttagataagttgaggaagacttgaggtgcggactgtggttatgtcgacag |
374 |
Q |
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| T |
39582059 |
tgaagaagacttagataagttgaggaagacttgaggtgcggactgtggttatgtcgacag |
39582118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 84 - 249
Target Start/End: Original strand, 39525432 - 39525598
Alignment:
| Q |
84 |
ttcagtatcagtaacgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattg---a |
180 |
Q |
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| T |
39525432 |
ttcagtaacagtaacgttgctatctgatccacaactgatgaagtatatgtcttgttcatcgtatccgagcgaggggaagtataatgatgagaattgaata |
39525531 |
T |
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| Q |
181 |
agaaaa-ttactaaaatgatacagtgttgaattgccattggggagagagttcaaaattgtgtttgtttga |
249 |
Q |
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| T |
39525532 |
agaaaagcaagtaagatgatagagtgttgaattgccat---ggagagagttgaaaattatgtttgtttga |
39525598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 39521945 - 39522034
Alignment:
| Q |
97 |
acgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaagaaaa |
186 |
Q |
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| T |
39521945 |
acgtcgatatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaagaaaa |
39522034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 245
Target Start/End: Original strand, 39544741 - 39544887
Alignment:
| Q |
103 |
atatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaag----aaaattactaaaatga |
198 |
Q |
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| T |
39544741 |
atatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaagtaaaatga |
39544840 |
T |
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| Q |
199 |
tacagtgttgaattgccattggggagagagttcaaaattgtgtttgt |
245 |
Q |
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| T |
39544841 |
tagtgtgttgaactgccattggagagagagttgataattgtgtttgt |
39544887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 39581194 - 39581296
Alignment:
| Q |
160 |
aattgtaatgatgagaattgaagaaaa----ttactaaaatgatacagtgttgaattgccattggggagagagttcaaaattgtgtttgtttgaatgatc |
255 |
Q |
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| T |
39581194 |
aattgtaatgatgagaattgaagaagaaaagttagtagaacgatagactgttgaattgccat-ggggagagagttgataattgtgtttgtttgaatgatt |
39581292 |
T |
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| Q |
256 |
tttt |
259 |
Q |
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|||| |
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| T |
39581293 |
tttt |
39581296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 39576590 - 39576677
Alignment:
| Q |
97 |
acgttgatatcttatccacaactgatgaagtatatgtcttggtcatcgtattcaagtgaggcgaattgtaatgatgagaattgaagaa |
184 |
Q |
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| T |
39576590 |
acgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgtagtgatgagaattgaagaa |
39576677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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