View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21414_high_3 (Length: 339)
Name: NF21414_high_3
Description: NF21414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21414_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 47688533 - 47688199
Alignment:
| Q |
5 |
gagaagcagagattaggcaaagcaaaagctaacattcatttgatgcaagttaattcaaatctcaccaaatagtttaccttaattaagcacaagataaaca |
104 |
Q |
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| T |
47688533 |
gagaggcatagattaggcaaagcaaaagctaacattcatttgatgcaagttaattcaaatctcaccaaatagtttaccttaattaagcacaagataaaca |
47688434 |
T |
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| Q |
105 |
aggattatctaattaagaagcagaattaagtttttcacctagctagctaattgatcttgattaatagttctcctagctaactaattaactaattgatcat |
204 |
Q |
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| T |
47688433 |
aggattatctaattaagaagcagaattaagtttttcacctagctagctaattgatcttgattaatagttctcctagctaactaattaactaattgatcat |
47688334 |
T |
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| Q |
205 |
aaaagttaaaatgcatccgaattggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtaccagttcccatcatcagaagatttga |
304 |
Q |
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| T |
47688333 |
aaaagttaaaatgcatccgaattggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtactagttcccatcatcagaagatttga |
47688234 |
T |
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| Q |
305 |
ggtaaaggttttcgccgccatcaccaccgccgcct |
339 |
Q |
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| T |
47688233 |
ggtaaaggttttcgccgccatcaccaccgccgcct |
47688199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 35836311 - 35836358
Alignment:
| Q |
283 |
ttcccatcatcagaagatttgaggtaaaggttttcgccgccatcacca |
330 |
Q |
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| T |
35836311 |
ttcccatcaccagaagatttcaggtaaagtgtttcgccgccatcacca |
35836358 |
T |
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