View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21414_high_6 (Length: 303)

Name: NF21414_high_6
Description: NF21414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21414_high_6
NF21414_high_6
[»] chr7 (3 HSPs)
chr7 (62-303)||(47680031-47680270)
chr7 (62-181)||(19278080-19278199)
chr7 (17-62)||(47679792-47679837)
[»] chr1 (6 HSPs)
chr1 (62-173)||(37201164-37201275)
chr1 (62-173)||(19036335-19036446)
chr1 (62-152)||(28040234-28040324)
chr1 (62-156)||(7794020-7794114)
chr1 (71-152)||(18282160-18282241)
chr1 (85-152)||(41520237-41520306)
[»] chr3 (3 HSPs)
chr3 (65-152)||(49018865-49018952)
chr3 (62-149)||(6173005-6173092)
chr3 (62-149)||(6252349-6252436)
[»] chr6 (3 HSPs)
chr6 (62-156)||(32116542-32116635)
chr6 (62-152)||(32120837-32120927)
chr6 (64-144)||(29337193-29337273)
[»] chr8 (5 HSPs)
chr8 (69-148)||(24125936-24126015)
chr8 (68-156)||(25020902-25020990)
chr8 (62-152)||(24322533-24322623)
chr8 (64-156)||(10950302-10950394)
chr8 (64-156)||(10958307-10958399)
[»] chr5 (2 HSPs)
chr5 (64-155)||(434206-434297)
chr5 (64-187)||(6821238-6821361)
[»] chr2 (2 HSPs)
chr2 (64-187)||(8588977-8589100)
chr2 (62-152)||(9684542-9684625)
[»] chr4 (2 HSPs)
chr4 (63-149)||(56461225-56461310)
chr4 (62-176)||(24403512-24403626)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 7e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 62 - 303
Target Start/End: Original strand, 47680031 - 47680270
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgcatctt 161  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47680031 gccaacctccattgaagatctccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactctttatcaaacaacatagtcgcatctt 47680130  T
Q  162 gcatatgaatcagtttgcacatcctttggtcnnnnnnnncttcaacgatacccatgcataatagaagtagtttttaacttttaagagattgtttacctaa 261  Q
    ||||||||||| ||| ||||||||||||| |        ||| |||||||||||||||| |||||||||||| | ||||||||||||| |||||||||||    
T  47680131 gcatatgaatcggttggcacatcctttgg-ccaaaaaaactttaacgatacccatgcatgatagaagtagttgtaaacttttaagaga-tgtttacctaa 47680228  T
Q  262 gttccaaaatagttttactgtgtttaatttcttaaacagatg 303  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  47680229 gttccaaaatagttttaccgtgtttaatttcttaaacagatg 47680270  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 181
Target Start/End: Original strand, 19278080 - 19278199
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgcatctt 161  Q
    ||||||||||||||||| || ||||||||||||| |||||||| ||||||||||||||||| | ||| || ||||| || ||||||||||| ||| || |    
T  19278080 gccaacctccattgaaggtccccaaagaaaggacctccaccaaccacaatgtcctcaaccgtttcacgcagctctttattaaacaacatagccgcctcct 19278179  T
Q  162 gcatatgaatcagtttgcac 181  Q
     ||| |||||| ||| ||||    
T  19278180 ccatgtgaatcggttggcac 19278199  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 47679792 - 47679837
Alignment:
Q  17 tgtggtgctttaggagggacaatccttgcaagtaaaactactaacg 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47679792 tgtggtgctttaggagggacaatccttgcaagtaaaactactaacg 47679837  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 37201164 - 37201275
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgcatctt 161  Q
    ||||||||||||||||| || | ||||||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  37201164 gccaacctccattgaaggtccctaaagaaatgacatccaccaaccacaatgtcctcaaccgctccacgcaactctttatcaaacatcatagtcgcctctt 37201263  T
Q  162 gcatatgaatca 173  Q
     ||| |||||||    
T  37201264 tcatgtgaatca 37201275  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 19036335 - 19036446
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgcatctt 161  Q
    ||||||||||||||||| || ||| ||||||||| ||||| || ||||||||||||||||||| ||| |||||||| || ||||||||| ||||| || |    
T  19036335 gccaacctccattgaaggtccccagagaaaggacctccactaaccacaatgtcctcaaccgcttcacgcaactctttataaaacaacatggtcgcctcct 19036434  T
Q  162 gcatatgaatca 173  Q
     ||| |||||||    
T  19036435 ccatgtgaatca 19036446  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 28040324 - 28040234
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatag 152  Q
    |||||| |||||||||| || ||||||||||||| |||||||| ||||||||||||||||||| ||| ||||| || |||||||| |||||    
T  28040324 gccaacatccattgaaggtccccaaagaaaggacctccaccaaccacaatgtcctcaaccgcttcacgcaactttttatcaaacaccatag 28040234  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 7794114 - 7794020
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgc 156  Q
    ||||||||||||||||| || |||||||||| || |||||||| ||||| |||||||||  |||||| ||| |||| |||||| |||||||||||    
T  7794114 gccaacctccattgaaggtccccaaagaaagaacctccaccaaccacaacgtcctcaactactccacccaattctttatcaaataacatagtcgc 7794020  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 18282160 - 18282241
Alignment:
Q  71 cattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatag 152  Q
    |||| ||| |||| |||||||||||| | ||||| | ||||||||||||| |||||||  ||||||| ||||||||||||||    
T  18282160 cattaaaggtcacaaaagaaaggacaactaccaaccgcaatgtcctcaactgctccacggaactcttgatcaaacaacatag 18282241  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 41520306 - 41520237
Alignment:
Q  85 aaagaaaggacatccaccaatcacaatgtcctcaaccgctcca--cacaactcttcatcaaacaacatag 152  Q
    ||||||||||| |||||||| |||||||||||||||| |||||  | || ||||| ||||||||||||||    
T  41520306 aaagaaaggacctccaccaaccacaatgtcctcaaccactccacgcgcagctctttatcaaacaacatag 41520237  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 49018865 - 49018952
Alignment:
Q  65 aacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatag 152  Q
    |||||||||||||| || |||||||||||||||||||||| |||||||||||||||| ||||||| | ||||| ||||||||||||||    
T  49018865 aacctccattgaaggtccccaaagaaaggacatccaccaaccacaatgtcctcaacccctccacatagctctttatcaaacaacatag 49018952  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 6173092 - 6173005
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaaca 149  Q
    ||||||||||||||||| || |||||||| |||| ||||  || |||||| ||||||||||||||||||||||||| |||||||||||    
T  6173092 gccaacctccattgaaggtccccaaagaatggacctccataaaccacaatatcctcaaccgctccacacaactctttatcaaacaaca 6173005  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 6252436 - 6252349
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaaca 149  Q
    ||||||||||||||||| || |||||||| |||| || |  || |||||| ||||||||| ||||||||||||||| |||||||||||    
T  6252436 gccaacctccattgaaggtccccaaagaatggacctcaataaaccacaatatcctcaaccactccacacaactctttatcaaacaaca 6252349  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 32116542 - 32116635
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgc 156  Q
    ||||||||||||| ||| || ||||| |||||| || |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  32116542 gccaacctccattaaaggtccccaaa-aaaggatattcaccaaccacaatgtcctcaaccgctccacccaactctttatcaaacaacatagtcgc 32116635  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 32120837 - 32120927
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatag 152  Q
    ||||||||||||||||| || ||||||||||||| |||||||| |||| ||||||||| | |||||| || ||||| ||||||||||||||    
T  32120837 gccaacctccattgaaggtccccaaagaaaggacttccaccaaccacattgtcctcaatcactccacgcagctctttatcaaacaacatag 32120927  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 29337273 - 29337193
Alignment:
Q  64 caacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaa 144  Q
    ||||||||||||||| |    ||||||||||| |||||||| |||||||||||||||| |||||| |||||||| ||||||    
T  29337273 caacctccattgaaggttcttaaagaaaggacctccaccaaccacaatgtcctcaaccactccacgcaactctttatcaaa 29337193  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 24125936 - 24126015
Alignment:
Q  69 tccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaac 148  Q
    |||||||||| || ||||||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||||||||    
T  24125936 tccattgaaggtccccaaagaaaggacctccaccaaccacaatgtcctcaaccgctccacgcagctctttatcaaacaac 24126015  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 25020990 - 25020902
Alignment:
Q  68 ctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgc 156  Q
    ||||||||||| ||  |||||||||||| |||||||| |||||||| |||||| |||||||  | ||||| ||||||||||||||||||    
T  25020990 ctccattgaagctccacaaagaaaggacctccaccaaccacaatgttctcaactgctccacgtagctctttatcaaacaacatagtcgc 25020902  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 24322533 - 24322623
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatag 152  Q
    ||||||||||| || || ||  |||||||||||| |||||||| ||||| ||||| |||| |||||| |||||||| ||||||||||||||    
T  24322533 gccaacctccactggaggtccacaaagaaaggacctccaccaaccacaaagtccttaacctctccacgcaactctttatcaaacaacatag 24322623  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 10950394 - 10950302
Alignment:
Q  64 caacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgc 156  Q
    ||||||||||||||| || ||||||||||||||| || ||| || |||||||||||   ||||| ||||||||| ||| || |||||||||||    
T  10950394 caacctccattgaaggtccccaaagaaaggacattcaacaaccataatgtcctcaagtactccatacaactctttatcgaataacatagtcgc 10950302  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 10958399 - 10958307
Alignment:
Q  64 caacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgc 156  Q
    ||||||||||||||| || ||||||||||||||| || ||| || |||||||||||   ||||| ||||||||| ||| || |||||||||||    
T  10958399 caacctccattgaaggtccccaaagaaaggacattcaacaaccataatgtcctcaagtactccatacaactctttatcgaataacatagtcgc 10958307  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 434206 - 434297
Alignment:
Q  64 caacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcg 155  Q
    ||||||||| ||||| || |||||||| |||| ||||| || |||||| |||||||| |||||||||||||||| ||| |||||||||||||    
T  434206 caacctccaatgaaggtccccaaagaacggacctccacaaaccacaatatcctcaactgctccacacaactctttatcgaacaacatagtcg 434297  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 6821361 - 6821238
Alignment:
Q  64 caacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgcatcttgc 163  Q
    |||||||| |||||| || | ||||||||||   ||| |||  ||||| ||||||||| ||||||||||||||| ||| |||||||||||||| |||| |    
T  6821361 caacctccgttgaaggtccctaaagaaaggatccccatcaacaacaatatcctcaaccactccacacaactctttatcgaacaacatagtcgcttcttcc 6821262  T
Q  164 atatgaatcagtttgcacatcctt 187  Q
    || |||||  ||| ||||||||||    
T  6821261 atgtgaattggttggcacatcctt 6821238  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 8588977 - 8589100
Alignment:
Q  64 caacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgcatcttgc 163  Q
    ||||||||||||||| || | |||||||  || |||||  | |||||| ||||  |||| ||||| |||||||| |||||||||||||||||| || | |    
T  8588977 caacctccattgaaggtccctaaagaaaacacctccacacaccacaatatccttgaccgatccacgcaactctttatcaaacaacatagtcgcttcatcc 8589076  T
Q  164 atatgaatcagtttgcacatcctt 187  Q
    || |||||||||| ||||||||||    
T  8589077 atgtgaatcagttggcacatcctt 8589100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 9684625 - 9684542
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatag 152  Q
    ||||||||||||||||| || || |||||||||| |||||       |||||||||||||||| ||| || ||||| ||||||||||||||    
T  9684625 gccaacctccattgaaggtctcctaagaaaggacctccac-------aatgtcctcaaccgcttcacgcagctctttatcaaacaacatag 9684542  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 56461310 - 56461225
Alignment:
Q  63 ccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaaca 149  Q
    |||||||  |||||||||| ||||| ||||||| |||| ||| ||||||||| ||||||||||||| |||||||| |||||||||||    
T  56461310 ccaacctttattgaagatc-ccaaaaaaaggacctccatcaaccacaatgtcttcaaccgctccacgcaactctttatcaaacaaca 56461225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 24403512 - 24403626
Alignment:
Q  62 gccaacctccattgaagatcaccaaagaaaggacatccaccaatcacaatgtcctcaaccgctccacacaactcttcatcaaacaacatagtcgcatctt 161  Q
    |||| |||||||| ||| || ||||||||||||| ||||| || |||||| || ||||  ||||| |||| ||||| || ||| |||||||| || || |    
T  24403512 gccaccctccattaaaggtccccaaagaaaggacctccactaaccacaatctcttcaattgctcctcacatctctttattaaataacatagttgcctcct 24403611  T
Q  162 gcatatgaatcagtt 176  Q
     ||| ||||||||||    
T  24403612 ccatgtgaatcagtt 24403626  T

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