View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21414_low_1 (Length: 740)
Name: NF21414_low_1
Description: NF21414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21414_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 686; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 5 - 722
Target Start/End: Original strand, 10162116 - 10162833
Alignment:
| Q |
5 |
gggcagtgggacccttcaaccctctaagcattgatcaggagaagaaagattcaaagggtaggcactcatgcatggaatggcttgataaacaagaaacaaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10162116 |
gggcagtgggacccttcaaccctctaaccattgatcaggagaagaaagattcaaagggtaggcactcatgcatggaatggcttgataaacaagaaacaaa |
10162215 |
T |
|
| Q |
105 |
ctcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgcaactggattgaaacaaagcaagataaagtttatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10162216 |
ctcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgcaactggattgaaacaaagcaagataaagtttatt |
10162315 |
T |
|
| Q |
205 |
tgggtgttgagagatgctgataaaggagacatctttgataaaaatgaagggaaaagaggtgaactttcgaaagggtttgaagagagagttgaaggaatgg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10162316 |
tgggtgttgagagatgctgataaaggagacatctttgataaaaatgaagggaaaagaggtgaactttcaaaagggtttgaagagagagttgaaggaatgg |
10162415 |
T |
|
| Q |
305 |
gctttgttgtgagggattgggcaccccagttggaaattctaagccacccttcaacgggagggtttatgagtcattgtggatggaactctatcttagagac |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
10162416 |
gctttgttgtgagggattgggcaccccagttggaaattctaagccacccttcaacgggagggtttatgagtcattgtggatggaactctaccttagagac |
10162515 |
T |
|
| Q |
405 |
catttcaatgggggtgccaatagcagcatggcctatgcattctgaccaaccaagaaactgtgttttgataacacaagtgttaaagattggtttggttgtg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10162516 |
catttcaatgggggtgccaatagcagcatggcctatgcattctgaccaaccaagaaactgtgttttgataacacaagtgttaaagattggtttggttgtg |
10162615 |
T |
|
| Q |
505 |
aaggactgggctaaaagacatgaattggttactgcttcaaatattgagaatgttgttagaaggttgatggagacaacggaaggtgatgagatgcgagaga |
604 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10162616 |
aaggactgggctaaaagacataaattggttactgcttcaaatattgagaatgttgttagaaggttgatggagacaacggaaggtgatgagatgcgagaga |
10162715 |
T |
|
| Q |
605 |
gagcaataaaacttaaaaatgttgttggtacgtcaatggatgaaggtggagtctctcgtatggaaatggattctttcatcgctcatattactagatagtt |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
10162716 |
gagcaataaaacttaaaaatgttgttggtacgtcaatggatgaaggtggagtctctcgtattgaaatggattcttttatcgctcatattactagatagtt |
10162815 |
T |
|
| Q |
705 |
gttgtggtaatgatgatc |
722 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
10162816 |
gttgtgtaaatgatgatc |
10162833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 599 - 710
Target Start/End: Original strand, 10163561 - 10163672
Alignment:
| Q |
599 |
gagagagagcaataaaacttaaaaatgttgttggtacgtcaatggatgaaggtggagtctctcgtatggaaatggattctttcatcgctcatattactag |
698 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
10163561 |
gagagagagagataaaacttaaaaatgttgttagtacgtcaatggatgaaggaggagtttctcgtatggaaatggattctttcattgctcatattactag |
10163660 |
T |
|
| Q |
699 |
atagttgttgtg |
710 |
Q |
| |
|
||| ||| |||| |
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|
| T |
10163661 |
atatttgctgtg |
10163672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 482 - 559
Target Start/End: Original strand, 10163482 - 10163559
Alignment:
| Q |
482 |
tgttaaagattggtttggttgtgaaggactgggctaaaagacatgaattggttactgcttcaaatattgagaatgttg |
559 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
10163482 |
tgttaaagattggtttggttgtcgaggattgggctaatagacatgaattggttactgcttcagatattgagaatgttg |
10163559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 5 - 705
Target Start/End: Original strand, 1609117 - 1609814
Alignment:
| Q |
5 |
gggcagtgggacccttcaaccctctaagcattgatcaggagaagaaagattcaaagggtaggcactcatgcatggaatggcttgataaacaagaaacaaa |
104 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |
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|
| T |
1609117 |
gggcagttggacccttcaaccctcttaccattga---gaagaagaaagattcaaagggtaggcacttatgtatggaatggcttgataaacaagaaccaaa |
1609213 |
T |
|
| Q |
105 |
ctcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgcaactggattgaaacaaagcaagataaagtttatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |
|
|
| T |
1609214 |
ctcagttatatatgtatcttttggaacaacaacaaccttgacagatgaagaaattgaacagattgcaactgggttggaacaaagcaagataaagttcatt |
1609313 |
T |
|
| Q |
205 |
tgggtgttgagagatgctgataaaggagacatctttgataaaaatgaagggaaaagaggtgaactttcgaaagggtttgaagagagagttgaaggaatgg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
1609314 |
tgggtgttgagagatgctgataaaggagacatatttgatggaaatgaagggaaaagaggtgaacttgcaaaagggtttgaagagagagttgaaggaatgg |
1609413 |
T |
|
| Q |
305 |
gctttgttgtgagggattgggcaccccagttggaaattctaagccacccttcaacgggagggtttatgagtcattgtggatggaactctatcttagagac |
404 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
1609414 |
ggtttgttgtgagggattgggcaccccagttggaaattctaagccacccttcaacaggagggtttatgagtcattgcggatggaactctactttagagag |
1609513 |
T |
|
| Q |
405 |
catttcaatgggggtgccaatagcagcatggcctatgcattctgaccaaccaagaaactgtgttttgataacacaagtgttaaagattggtttggttgtg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1609514 |
catttcaatgggggtgccaatagcagcatggcctatgcattctgaccagccaagaaactgtgttttcataacacaagtgttaaagattggtttggttgtg |
1609613 |
T |
|
| Q |
505 |
aaggactgggctaaaagacatgaattggttactgcttcaaatattgagaatgttgttagaaggttgatggagacaacggaaggtgatgagatgcgagaga |
604 |
Q |
| |
|
| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
1609614 |
atggattgggctaaaagacatgagttggttactgcttcagatattgagaatgttgttagaacgttgatggatacaatggaaggtgatgagatgcgagaga |
1609713 |
T |
|
| Q |
605 |
gagcaataaaacttaaaaatgttgttggtacgtcaatggatgaaggtggagtctctcgtatggaaatggattctttcatcgctcatattactagatagtt |
704 |
Q |
| |
|
||||||| ||||||||||||| | |||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1609714 |
gagcaatgaaacttaaaaatgctattggtatgtcgatggatgaaggcggagtttctcgtatggaaatggattctttcatcgctcatatcactagatagtt |
1609813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 311 - 702
Target Start/End: Original strand, 37721878 - 37722269
Alignment:
| Q |
311 |
ttgtgagggattgggcaccccagttggaaattctaagccacccttcaacgggagggtttatgagtcattgtggatggaactctatcttagagaccatttc |
410 |
Q |
| |
|
||||||| |||||||| || || ||||||||| |||| || |||| | || || ||||||||||||||||||||||| ||| | |||| ||| | |
|
|
| T |
37721878 |
ttgtgagagattgggccccacaattggaaattttaagtcattcttctataggtggttttatgagtcattgtggatggaattcttgtatggagagtattac |
37721977 |
T |
|
| Q |
411 |
aatgggggtgccaatagcagcatggcctatgcattctgaccaaccaagaaactgtgttttgataacacaagtgttaaagattggtttggttgtgaaggac |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| || ||| | ||||| | || ||||| | ||||||||||||||||||||||| |
|
|
| T |
37721978 |
tatgggggtgccaatagcagcatggcctatgcactctgaccaacctaggaacagagttttagttacggaagtgcttaagattggtttggttgtgaaggat |
37722077 |
T |
|
| Q |
511 |
tgggctaaaagacatgaattggttactgcttcaaatattgagaatgttgttagaaggttgatggagacaacggaaggtgatgagatgcgagagagagcaa |
610 |
Q |
| |
|
||| | |||| |||| ||||| | ||||| | | | ||||||||||| || |||||||||| |||| ||||||||||| ||| | | | |||| |
|
|
| T |
37722078 |
tggagtcaaagggatgagttggtgatggcttctattgtggagaatgttgtgaggaggttgatggctacaaaagaaggtgatgaaatgaggcaaaatgcaa |
37722177 |
T |
|
| Q |
611 |
taaaacttaaaaatgttgttggtacgtcaatggatgaaggtggagtctctcgtatggaaatggattctttcatcgctcatattactagatag |
702 |
Q |
| |
|
| || | ||||||| || | |||||||||||||||||| || || ||||||||| ||||||||||||| || ||| | ||||||||| |
|
|
| T |
37722178 |
tgaacttgaaaaatgaaattctcaagtcaatggatgaaggtggtgtttcacgtatggaactggattctttcattgcccatgtgactagatag |
37722269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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