View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21415_high_4 (Length: 413)
Name: NF21415_high_4
Description: NF21415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21415_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 27476049 - 27475657
Alignment:
| Q |
1 |
atgcatcgtagagatattcttcgtcttcttattggaaactaacaatcttcttcctttttacaaggtatttggctgttgggaaaaagcgggggaggaattc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27476049 |
atgcatcgtagagatattctccgtcttcttgttggaaactaacaatctccttcctttttacaaggtatttggctgttgggaaaaagcgggggaggaattc |
27475950 |
T |
|
| Q |
101 |
ttgcttcagatcatcccaagtagctatggtggcacttgttcaaatatcaatatgacgacatcaagcagaattagtgttaaagcaagcaaattactaagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27475949 |
ttgcttcagatcatcccaagtagctatggtggcacttgttcaaatatcaatatgacgacatcaagcagaattagtgttaaagcaagcaaattactaagct |
27475850 |
T |
|
| Q |
201 |
tcgtgaatattgagaagctgctagcctcccatgcataatggaaacacttaaatgtgttagattagtggc-nnnnnnnaatggcaaaatatatacatagat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27475849 |
tcgtgaatattgagaagctgctagcctcccatgcataatggaaacacttaaatgtgttagattagtggctttttttgaatggcaaaatatatacatagat |
27475750 |
T |
|
| Q |
300 |
aaataaagaaatataaaagtacagaacatacaaaacagtcggcaagcgacacaccaacaaaacaccccaaaggaggaacacccccaaaacccc |
392 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27475749 |
aaataaagaaatataaaagtacagaatatacaaaacagtcggcaagcgacacaccaacaaaacaccctaaaggaggaacacccccaaaacccc |
27475657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 17555177 - 17555255
Alignment:
| Q |
51 |
ttcctttttacaaggtatttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagtagctatggt |
130 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||| ||| | |||||| |||||||||||||| |
|
|
| T |
17555177 |
ttccttttt-caaggtatttgactgttcggaaaaagcggcggaggaatgctttctttaaatcatctcaagtagctatggt |
17555255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 28312901 - 28312788
Alignment:
| Q |
25 |
cttcttattggaaactaacaatcttcttcctttttacaaggtatttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagtagc |
124 |
Q |
| |
|
|||||| |||||||| ||| |||| |||||| ||| |||||||||| | ||| |||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
28312901 |
cttcttgttggaaaccaactatctccttcctcttttcaaggtattttgttgtaaggaaaaagcgggggaggaattctttctttagatcatcccaagtagc |
28312802 |
T |
|
| Q |
125 |
tatggtggcacttg |
138 |
Q |
| |
|
| ||||| |||||| |
|
|
| T |
28312801 |
tttggtgccacttg |
28312788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 13372212 - 13372139
Alignment:
| Q |
63 |
aggtatttggctgttgggaaaaagcgggggaggaattcttgcttcagatcatcccaagtagctatggtggcact |
136 |
Q |
| |
|
|||||||| ||| |||||||||||||| |||| | | | | ||||||||||| |||||||||||||||| |||| |
|
|
| T |
13372212 |
aggtattttgctattgggaaaaagcggcggagtattgcattcttcagatcattccaagtagctatggtgccact |
13372139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 75651 - 75773
Alignment:
| Q |
1 |
atgcatcgtagagatattcttcgtcttcttattggaaactaacaatcttcttccttttta--caaggtatttggctgttgggaaaaagcgggggaggaat |
98 |
Q |
| |
|
||||||| ||||||| ||||||||||| || |||||||| || |||| |||||||||| |||||||||||| ||||||||||| |||| |||||||| |
|
|
| T |
75651 |
atgcatcctagagattttcttcgtctttttgttggaaaccgactatctccttccttttttttcaaggtatttggttgttgggaaaaggcggtggaggaat |
75750 |
T |
|
| Q |
99 |
tcttgcttcagatcatcccaagt |
121 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
75751 |
gctttcttcagatcatcccaagt |
75773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 25131616 - 25131749
Alignment:
| Q |
5 |
atcgtagagatattcttcgtcttcttattggaaactaacaatcttcttcctttttacaaggtatttggctgttgggaaaaagcgggggaggaattcttgc |
104 |
Q |
| |
|
||||||||||| |||| ||||||||| || |||| || |||| |||||||||| |||| ||||||| | | |||||||| | |||||||| ||| | |
|
|
| T |
25131616 |
atcgtagagattttctccgtcttcttgttagaaatcgactatctccttccttttttcaagatatttggatatcgggaaaaaacaatggaggaatgctttc |
25131715 |
T |
|
| Q |
105 |
ttcagatcatcccaagtagctatggtggcacttg |
138 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
25131716 |
ttcagatcatcccaagtagctatggtgccacttg |
25131749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 51745597 - 51745486
Alignment:
| Q |
158 |
acatcaagcagaattagtgttaaagcaagcaaattactaagcttcgtgaatattgagaagctgctagcctcccatgcataatggaaacacttaaatgtgt |
257 |
Q |
| |
|
||||||| || ||| |||| |||||||| |||||||| ||||||| | |||||||||| ||| | | |||||||||||||||| ||||||| ||||| | |
|
|
| T |
51745597 |
acatcaaacaaaatcagtgctaaagcaaccaaattacaaagcttcataaatattgagatgctaccaacctcccatgcataatgaaaacactgaaatgctt |
51745498 |
T |
|
| Q |
258 |
tagattagtggc |
269 |
Q |
| |
|
|||||||||||| |
|
|
| T |
51745497 |
tagattagtggc |
51745486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 36650115 - 36650167
Alignment:
| Q |
331 |
aaaacagtcggcaagcgacacaccaacaaaacaccccaaaggaggaacacccc |
383 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||| |||||||||||| |
|
|
| T |
36650115 |
aaaatagtcggcaagcgacacacccgcaaaactccccaaaagaggaacacccc |
36650167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University