View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21415_high_5 (Length: 409)
Name: NF21415_high_5
Description: NF21415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21415_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 293401 - 293776
Alignment:
| Q |
17 |
gaacgcagcaattggcgccggtgggggacttggtgtttcttctgggagtacatagagttctggggggcaatagtcaggatccaaaagggtgcggtcggga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293401 |
gaacgcagcaattggcgccggtgggggacttggtgtttcttctgggagtacatagagttctggggggcaatagtcaggatccaaaagggtgcggtcggga |
293500 |
T |
|
| Q |
117 |
acataattctttccgatccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293501 |
acataattctttccgatccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctc |
293600 |
T |
|
| Q |
217 |
tatgaacaatgcctgtatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatcaatgcatttcgtctagaagaatctacgcc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293601 |
tatgaacaatgcctgtatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatcaatgcatttcgtctagaagaatctacgcc |
293700 |
T |
|
| Q |
317 |
ttgcaacacacgtccaaacatgacagattctaagtttgaagggaagttgcgctctttcatataatcggcaagagta |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
293701 |
ttgcaacacacgtccaaacatgacagattctaagtttgaagggaagttgcgctctttcatataatctgcaagagta |
293776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 117 - 391
Target Start/End: Complemental strand, 27492546 - 27492272
Alignment:
| Q |
117 |
acataattctttccgatccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctc |
216 |
Q |
| |
|
|||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||| | ||| || || || ||||||| ||||||| ||| | |
|
|
| T |
27492546 |
acataattctttccaattctaaggtctgttgctgcaccaaaatcaatgagtttaatctgccctttttttgtaacaaccaagttggaaggctttacatccc |
27492447 |
T |
|
| Q |
217 |
tatgaacaatgcctgtatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatcaatgcatttcgtctagaagaatctacgcc |
316 |
Q |
| |
|
| ||||| ||||| || || ||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||| | | ||||| |||| || |
|
|
| T |
27492446 |
tgtgaacgatgccagtgtcgtgaattttcttaagagatgtaatgatttggcgcattatttgcttgatgatcaatgcatttctttttgaagagtctatacc |
27492347 |
T |
|
| Q |
317 |
ttgcaacacacgtccaaacatgacagattctaagtttgaagggaagttgcgctctttcatataatcggcaagagt |
391 |
Q |
| |
|
||||||| || || ||||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||| |
|
|
| T |
27492346 |
ttgcaacgcatttcgaaacatgacagattctaagttcgaagggaagtttttatctgtcatataatcagcaagagt |
27492272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 288
Target Start/End: Complemental strand, 27495236 - 27495080
Alignment:
| Q |
132 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
231 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
|
|
| T |
27495236 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27495137 |
T |
|
| Q |
232 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatca |
288 |
Q |
| |
|
| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||| |
|
|
| T |
27495136 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatgatca |
27495080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 288
Target Start/End: Complemental strand, 27501894 - 27501738
Alignment:
| Q |
132 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
231 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
|
|
| T |
27501894 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27501795 |
T |
|
| Q |
232 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatca |
288 |
Q |
| |
|
| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||| |
|
|
| T |
27501794 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatgatca |
27501738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 288
Target Start/End: Complemental strand, 27516686 - 27516530
Alignment:
| Q |
132 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
231 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||| || ||| ||| | || ||||| || || || ||||| | ||||||||||| || |||||| |||| | |
|
|
| T |
27516686 |
atcctaagatctgttgctgcaccaaaatcaacgaatttgatccgaccttgttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27516587 |
T |
|
| Q |
232 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgcttgatgatca |
288 |
Q |
| |
|
| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||| |
|
|
| T |
27516586 |
tgtcatgaattttcttaagagatgtaactatttggcgcattatttgcttgatgatca |
27516530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 278
Target Start/End: Complemental strand, 27507711 - 27507565
Alignment:
| Q |
132 |
atccgaaggtctgttgcagcaccaaaatcaatgagtttaatctgcccctgtttggtgaccactaagttggctggctttatatctctatgaacaatgcctg |
231 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||| || ||||||| | || |||| || || || ||||| | ||||||||||| || |||||| |||| | |
|
|
| T |
27507711 |
atcctaagatctgttgctgcaccaaaatcaacgaatttaatccgacctagttttgtaacaaccaagtttgaaggctttatatccctgtgaacagtgccag |
27507612 |
T |
|
| Q |
232 |
tatcatgaattttcttaagagaagtaattatctggcgcatgatttgc |
278 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
27507611 |
tgtcatgaattttcttaagagatgtaattatctggcgcattatttgc |
27507565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University