View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21415_low_1 (Length: 777)
Name: NF21415_low_1
Description: NF21415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21415_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 275 - 770
Target Start/End: Original strand, 16687639 - 16688134
Alignment:
| Q |
275 |
aggatataaaagtgcgacttaatgtcacactcaagctacgatgacaatttcacaacttttcgcacgctttcctcctcatttctcttcactcatttgagcg |
374 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
16687639 |
aggatatagaagcgcgacttaacgtcacactcaagctacgatgacaatttcaccacttttcgcacactttcctcctcatttctcgtcactcatttgagcg |
16687738 |
T |
|
| Q |
375 |
ttagagtgctgacttgttttgcaagtctctttccgctcgccagagaattatctcatccgctccataatctttcctccctcgcacttgactctgatcaata |
474 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16687739 |
ttagagtgctaacttgttttgcaagtctctttccgctcgccagagaattatctcatccgctccataatctttcctccctcgcacttgactctgatcaata |
16687838 |
T |
|
| Q |
475 |
gcatgatcatattcgacaatgcatctctaccctggtctactccaaaacattggcactggaaggagggaaaacttcatcgtttccattggagtcctttgat |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16687839 |
gcatgatcatattcgacaatgcatctctaccctggtctactccaaaacattggcactggaaggagggaaaacttcatcgtttccatcggagtcctttgat |
16687938 |
T |
|
| Q |
575 |
tcaaccactgtaaccgtttcagtgtttccataaccattttttgctacgctctctcattcaccttgtgctaagaaaaccactgatgaaagctacaacatag |
674 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16687939 |
tcaaccaccataaccgtttcggtgtttccataaccattttttgctacgctctctcgttcaccttgtgctaagaaaaccactgatgaaagctacaacatag |
16688038 |
T |
|
| Q |
675 |
tcgtggctcttcctttgggatccatactctttagagttaagctgacaccatcctctctcccgtcgcattctgcgacgtcaatgttgcttcttctca |
770 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
16688039 |
tcgtggctcttcctttgggatccatactctttagagttaagctgacaccatcctctctcccgtcgcagaaggggacgtcgatgttgcttcttctca |
16688134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 16687207 - 16687454
Alignment:
| Q |
18 |
gtttctagctgtgtaacccatatgagggttctgtaattggggcannnnnnnn-gtagttgcg----attgcaattttaataaaaatgcttctggttaaga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16687207 |
gtttctagctgtgtaacccatatgagggttctgtaattggggcttttttttttgtagttgcttgctattgcaattttaataaaaatgcttctggttaaga |
16687306 |
T |
|
| Q |
113 |
aaaagaattattactcctgtttatggcttcagcatttcattgtatatattattgatacttcttctgatctttctattctaaatgtttgtaaccaaagttg |
212 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16687307 |
aaaagaatta---ctcctgtttatggcttcagcatttcattgtatatattattgatacttcttctgatctttctattctaaatgtttgtaaccaaagttg |
16687403 |
T |
|
| Q |
213 |
gagtactcgagttaaagatcacatgcgtctttcagacatcattgatgtgtt |
263 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
16687404 |
gagtactcgagttaacgatcacatgtttctttcagacatcattgatgtgtt |
16687454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University