View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21415_low_10 (Length: 260)

Name: NF21415_low_10
Description: NF21415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21415_low_10
NF21415_low_10
[»] scaffold0003 (2 HSPs)
scaffold0003 (26-147)||(67233-67354)
scaffold0003 (199-254)||(67340-67395)
[»] chr6 (5 HSPs)
chr6 (26-147)||(27420009-27420130)
chr6 (44-143)||(27673249-27673348)
chr6 (90-147)||(26829370-26829427)
chr6 (199-254)||(27419968-27420023)
chr6 (191-241)||(26829405-26829455)
[»] chr4 (1 HSPs)
chr4 (140-171)||(18684087-18684118)


Alignment Details
Target: scaffold0003 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 67233 - 67354
Alignment:
Q  26 acgtatttgtctcagtgcttcataaagaagaatgaagtattttctaagattgtcctaaacctgtatgttaaaaatgaaacttaagtgcattacagagtgg 125  Q
    ||||||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  67233 acgtatttgtctcggtcctacatagagaagaatgaagtattttctaagattgtcctaaacctgtatgttaaaaatgaaacgcaagtgcattgcagagtgg 67332  T
Q  126 taaacttttatatcaaatcctt 147  Q
    || || ||||||||||||||||    
T  67333 tagacgtttatatcaaatcctt 67354  T

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Target: scaffold0003; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 67340 - 67395
Alignment:
Q  199 ttatatcaaatccttaagttaaccaatcaaatagctactaagatagagtattatct 254  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||    
T  67340 ttatatcaaatccttaagtcaaccaatcaaatagctactacgataacgtattatct 67395  T

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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 27420130 - 27420009
Alignment:
Q  26 acgtatttgtctcagtgcttcataaagaagaatgaagtattttctaagattgtcctaaacctgtatgttaaaaatgaaacttaagtgcattacagagtgg 125  Q
    ||||||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  27420130 acgtatttgtctcggtcctacatagagaagaatgaagtattttctaagattgtcctaaacctgtatgttaaaaatgaaacgcaagtgcattgcagagtgg 27420031  T
Q  126 taaacttttatatcaaatcctt 147  Q
    || || ||||||||||||||||    
T  27420030 tagacgtttatatcaaatcctt 27420009  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 27673348 - 27673249
Alignment:
Q  44 ttcataaagaagaatgaagtattttctaagattgtcctaaacctgtatgttaaaaatgaaacttaagtgcattacagagtggtaaacttttatatcaaat 143  Q
    |||||| |||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  27673348 ttcatagagaagaatgaaggattttctaagattgtcccaaacgtgtatgttaaaaatgaaactcaagtgcattgcagagtggtaaacttttatatcaaat 27673249  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 26829370 - 26829427
Alignment:
Q  90 atgttaaaaatgaaacttaagtgcattacagagtggtaaacttttatatcaaatcctt 147  Q
    ||||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||    
T  26829370 atgttaaaaatgaaactcaagtgcattgcaaagtggtaaacttttatttcaaatcctt 26829427  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 27420023 - 27419968
Alignment:
Q  199 ttatatcaaatccttaagttaaccaatcaaatagctactaagatagagtattatct 254  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||    
T  27420023 ttatatcaaatccttaagtcaaccaatcaaatagctactacgataacgtattatct 27419968  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 26829405 - 26829455
Alignment:
Q  191 gtaaactcttatatcaaatccttaagttaaccaatcaaatagctactaaga 241  Q
    ||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  26829405 gtaaacttttatttcaaatccttaagtcaaccaatcaaatagctactaaga 26829455  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 171
Target Start/End: Original strand, 18684087 - 18684118
Alignment:
Q  140 aaatccttgacttcatagcacatgtgtttgtt 171  Q
    ||||||||||||||||||||||||||||||||    
T  18684087 aaatccttgacttcatagcacatgtgtttgtt 18684118  T

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