View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21415_low_2 (Length: 586)

Name: NF21415_low_2
Description: NF21415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21415_low_2
NF21415_low_2
[»] chr4 (10 HSPs)
chr4 (107-586)||(3746195-3746683)
chr4 (288-405)||(31351661-31351779)
chr4 (297-405)||(13538252-13538361)
chr4 (299-405)||(35010382-35010489)
chr4 (299-392)||(9460177-9460270)
chr4 (16-48)||(3746104-3746136)
chr4 (301-392)||(35130612-35130704)
chr4 (299-338)||(38415494-38415533)
chr4 (418-474)||(4123160-4123214)
chr4 (297-392)||(49479471-49479567)
[»] chr5 (3 HSPs)
chr5 (417-474)||(7566381-7566438)
chr5 (297-392)||(24793489-24793585)
chr5 (315-388)||(39968933-39969007)
[»] chr3 (3 HSPs)
chr3 (298-392)||(9737574-9737669)
chr3 (288-333)||(52910376-52910421)
chr3 (297-333)||(11988928-11988964)
[»] chr7 (8 HSPs)
chr7 (297-405)||(9667228-9667337)
chr7 (293-404)||(23982018-23982130)
chr7 (298-392)||(37307674-37307769)
chr7 (298-410)||(24250144-24250257)
chr7 (297-405)||(27227261-27227370)
chr7 (297-402)||(25091166-25091271)
chr7 (302-405)||(32958491-32958595)
chr7 (297-333)||(47684484-47684520)
[»] chr1 (2 HSPs)
chr1 (289-405)||(2098748-2098864)
chr1 (298-392)||(8757272-8757367)
[»] chr8 (4 HSPs)
chr8 (289-373)||(1028751-1028836)
chr8 (301-392)||(28300102-28300194)
chr8 (299-391)||(42445770-42445863)
chr8 (289-333)||(19756417-19756461)
[»] scaffold0166 (1 HSPs)
scaffold0166 (297-392)||(35872-35968)
[»] chr6 (2 HSPs)
chr6 (297-391)||(21023683-21023778)
chr6 (297-392)||(7326328-7326424)
[»] chr2 (2 HSPs)
chr2 (288-333)||(37123631-37123676)
chr2 (297-333)||(8915639-8915675)


Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 107 - 586
Target Start/End: Original strand, 3746195 - 3746683
Alignment:
Q  107 tgttgggtaggcatggtggtggggttaagagtgattttgatgctaactctagagaagccaaagtagtgaaggagagaagagaataatggaagatgaatga 206  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  3746195 tgttgggtaggcatggtggtggggtta-gagtgattttgatgctaactctagagaaaccaaaatagtgaaggagagaagagaataatggaagatgaatga 3746293  T
Q  207 agtgtagctaagaggggtttgtttataagacaccaaatatagagggagaaaagtgaactaaaaaggacaaaagannnnnnnatcaggtaatctagtggct 306  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||       |||| |||| |||| ||||    
T  3746294 agtgtagccaagaggggtttgtttataagacaacaagtatagagggagaaaagtgaactaaaaaggacaaaagatttttttatcaagtaacctagcggct 3746393  T
Q  307 agattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatctctggtagctaccaaccgagttaaacttag 406  Q
    ||||| | ||||||||| | ||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  3746394 agatttacacacattatatgtggagaaatgggaaatccggggttcgaacctcacccctacacataatatctctggtagctaccaaccgagctaaacttac 3746493  T
Q  407 aagacaacactatttaacacttcattttctctctatctctatcttcttatcatatcaccaacctatcacattaagtat----acatcatttaactgtcc- 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||     
T  3746494 aagacaacactatttaacacttcattttctctctatctctatcttcttatcatatcaccaacctatcacattaagtatatagacatcatttaactgtcca 3746593  T
Q  502 -----aagcatttcaggtattaatccatctactatcttgcatccaaatcatttagctgtccaacactattcattgatattttattgtgaa 586  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746594 agtcgaagcatttcaggtattaatccatctactatcttgcatccaaatcatttagctgtccaacactattcattgatattttattgtgaa 3746683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 405
Target Start/End: Original strand, 31351661 - 31351779
Alignment:
Q  288 atcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctggtagct 386  Q
    |||| ||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| | | ||||||||| | |||||| |||| | ||||||||||||||    
T  31351661 atcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctggtagct 31351760  T
Q  387 accaaccgagttaaactta 405  Q
    |||||| ||| || |||||    
T  31351761 accaactgagctacactta 31351779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 297 - 405
Target Start/End: Original strand, 13538252 - 13538361
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctggtagctaccaaccga 395  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | |||||||| ||||||||||| ||    
T  13538252 tctagtggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctaccaactga 13538351  T
Q  396 gttaaactta 405  Q
    | || |||||    
T  13538352 gctacactta 13538361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 405
Target Start/End: Original strand, 35010382 - 35010489
Alignment:
Q  299 tagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctggtagctaccaaccgagt 397  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||| | | ||||||||| | || ||| |||| | |||||||| ||||||||||| |||     
T  35010382 tagtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagc 35010481  T
Q  398 taaactta 405  Q
    ||||||||    
T  35010482 taaactta 35010489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 392
Target Start/End: Complemental strand, 9460270 - 9460177
Alignment:
Q  299 tagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatctctggtagctaccaac 392  Q
    ||||||||| ||||| ||||||||||| |||||||||||  ||||  || || ||||| |  ||||||||| | |||||||| |||||||||||    
T  9460270 tagtggctatattcacacacattatgtgtggagaaatggggaatatgggatttgaaccccgaccctacacaaattatctctgatagctaccaac 9460177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 3746104 - 3746136
Alignment:
Q  16 atcataagtttcttctttttcaaatgatggtga 48  Q
    |||||||||||||||||||||||||||||||||    
T  3746104 atcataagtttcttctttttcaaatgatggtga 3746136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 392
Target Start/End: Original strand, 35130612 - 35130704
Alignment:
Q  301 gtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctggtagctaccaac 392  Q
    ||||||||||||| |||||| |||| || |||| ||| |||| | ||||||||||| |  ||||| |||| | ||||||||||||||||||||    
T  35130612 gtggctagattcacacacataatgtgtgaagaagtgggaaatccggggttcgaaccccggcccctgcacaaattatctctggtagctaccaac 35130704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 38415494 - 38415533
Alignment:
Q  299 tagtggctagattcaaacacattatgtatggagaaatgga 338  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  38415494 tagtggctagattcacacacattatgtatgaagaaatgga 38415533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 4123160 - 4123214
Alignment:
Q  418 atttaacacttcattttctctctatctctatcttcttatcatatcaccaacctatca 474  Q
    ||||||||||||||||||||| ||||||  ||||| ||||| ||||||||| |||||    
T  4123160 atttaacacttcattttctctttatctc--tcttcctatcacatcaccaacatatca 4123214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 392
Target Start/End: Complemental strand, 49479567 - 49479471
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctggtagctaccaac 392  Q
    |||||||| |||||||| ||||||||||| ||||||| | | |||| | || |||||||| | ||||||||| | | ||| |||| |||||||||||    
T  49479567 tctagtggttagattcacacacattatgtgtggagaagttggaaattcgggattcgaacccctacccctacataaattatttctgatagctaccaac 49479471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 417 - 474
Target Start/End: Complemental strand, 7566438 - 7566381
Alignment:
Q  417 tatttaacacttcattttctctctatctctatcttcttatcatatcaccaacctatca 474  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  7566438 tatttaacacttcattttctctctatctctctcttcctatcatatcatcaacctatca 7566381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 392
Target Start/End: Complemental strand, 24793585 - 24793489
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctggtagctaccaac 392  Q
    ||||||||||||||||| | ||||||||| | ||||||||| ||||   ||||||| ||| | |||||| |||| | |||||||| |||||||||||    
T  24793585 tctagtggctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagctaccaac 24793489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 39969007 - 39968933
Alignment:
Q  315 acacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctggtagctac 388  Q
    ||||||||||| ||||||| ||| |||| ||| |||| ||||||| | |||||||||||| || |||||||||||    
T  39969007 acacattatgtgtggagaagtgggaaatccagagttcaaacctcagctcctacacataatgtccctggtagctac 39968933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 298 - 392
Target Start/End: Original strand, 9737574 - 9737669
Alignment:
Q  298 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc-tcacccctacacataatatctctggtagctaccaac 392  Q
    ||||||| || ||||| ||||||||||| | ||||||| |||||| |  |||||||||| | |||||| |||||||||||||||||||||||||||    
T  9737574 ctagtggttatattcacacacattatgtgtagagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctctggtagctaccaac 9737669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 52910376 - 52910421
Alignment:
Q  288 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 333  Q
    |||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  52910376 atcaggtagtctagtgactagattcacacacattatgtgtggagaa 52910421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 11988928 - 11988964
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaa 333  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  11988928 tctagtggctagattcacacacattatgtgtggagaa 11988964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 405
Target Start/End: Original strand, 9667228 - 9667337
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctggtagctaccaaccga 395  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | |||||||| ||||||||||| ||    
T  9667228 tctagtggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctaccaactga 9667327  T
Q  396 gttaaactta 405  Q
    | || |||||    
T  9667328 gctacactta 9667337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 293 - 404
Target Start/End: Complemental strand, 23982130 - 23982018
Alignment:
Q  293 gtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac-ctcacccctacacataatatctctggtagctaccaa 391  Q
    ||||||||||||||||||||| |||||||||||   |||||||||| ||| | | |||||||| || ||| || |||| | |||| ||||||||||||||    
T  23982130 gtaatctagtggctagattcacacacattatgtgcagagaaatggagaatccggagttcgaactctaacctctgcacaaattatccctggtagctaccaa 23982031  T
Q  392 ccgagttaaactt 404  Q
    | |||||| ||||    
T  23982030 ctgagttatactt 23982018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 392
Target Start/End: Complemental strand, 37307769 - 37307674
Alignment:
Q  298 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctggtagctaccaac 392  Q
    |||||||||||||||||||||||||| | ||||||| |||  ||| | | ||||||||| | ||||| ||||||||||||||| ||||||| ||||    
T  37307769 ctagtggctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgaccccgacacataatatctcttgtagctatcaac 37307674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 410
Target Start/End: Original strand, 24250144 - 24250257
Alignment:
Q  298 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac-ctcacccctacacataatatctctggtagctaccaaccgag 396  Q
    |||||| ||||||||| ||||||||||| |||| || |||| ||| |||||||||||| | | ||||| |||||||| |   |||||||||||||| |||    
T  24250144 ctagtgactagattcacacacattatgtgtggaaaagtggagaatccagggttcgaacacccgcccctgcacataatgttcatggtagctaccaactgag 24250243  T
Q  397 ttaaacttagaaga 410  Q
    ||| ||||| ||||    
T  24250244 ttacacttacaaga 24250257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 297 - 405
Target Start/End: Original strand, 27227261 - 27227370
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctggtagctaccaaccga 395  Q
    ||||||||||||||||||||||||||||| ||||||| |||  |||   || |||||| | | ||||||| ||| | |||||||||||| ||||||| ||    
T  27227261 tctagtggctagattcaaacacattatgtgtggagaagtggggaatctgggattcgaaacacaacccctatacaaattatctctggtaggtaccaactga 27227360  T
Q  396 gttaaactta 405  Q
    | || |||||    
T  27227361 gctacactta 27227370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 402
Target Start/End: Complemental strand, 25091271 - 25091166
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctggtagctaccaaccga 395  Q
    ||||||||||||||||| ||||||||||| || |||| | ||||||   | ||| ||||||| |||||| |||| | |||| ||||||||||||||| ||    
T  25091271 tctagtggctagattcacacacattatgtgtgaagaagt-gaaaatctggagtttgaacctcgacccctgcacaaattatccctggtagctaccaactga 25091173  T
Q  396 gttaaac 402  Q
    | |||||    
T  25091172 gctaaac 25091166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 405
Target Start/End: Complemental strand, 32958595 - 32958491
Alignment:
Q  302 tggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac-ctcacccctacacataatatctctggtagctaccaaccgagttaa 400  Q
    |||||||||||| |||||||| || |||| || |||| ||| | |||||||||| || || ||| |||| | ||| | |||||||||||||||||| ||     
T  32958595 tggctagattcacacacattaagtgtggataagtggagaatccggggttcgaactctgactcctgcacaaattatttttggtagctaccaaccgagctac 32958496  T
Q  401 actta 405  Q
    |||||    
T  32958495 actta 32958491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 47684484 - 47684520
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaa 333  Q
    |||| |||||||||||| |||||||||||||||||||    
T  47684484 tctattggctagattcacacacattatgtatggagaa 47684520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 2098864 - 2098748
Alignment:
Q  289 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatctctggtagctac 388  Q
    |||| |||||||||||||||||||| ||||||||| | ||||||| |||| ||| | ||||||| |   | |||||||||||||||||  | ||||||||    
T  2098864 tcagataatctagtggctagattcacacacattatatgtggagaagtggagaatccggggttcggattccgcccctacacataatatccattgtagctac 2098765  T
Q  389 caaccgagttaaactta 405  Q
    |||| ||| || |||||    
T  2098764 caactgagctacactta 2098748  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 392
Target Start/End: Original strand, 8757272 - 8757367
Alignment:
Q  298 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctggtagctaccaac 392  Q
    ||||||| |||||||| ||||||||||| ||||||  |||  ||| ||||||||||||| |  ||||| |||||||| ||||||||||||||||||    
T  8757272 ctagtggttagattcacacacattatgtgtggagacgtggggaatccagggttcgaaccccggcccctgcacataatgtctctggtagctaccaac 8757367  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 1028836 - 1028751
Alignment:
Q  289 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataat 373  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||| || | ||| | | |||||||||||| ||||| ||||||||    
T  1028836 tcaggtagtctagtggctagattcacacacattatgtatgaagaagtgaagaatccggagttcgaacctcagcccctgcacataat 1028751  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 28300194 - 28300102
Alignment:
Q  301 gtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctggtagctaccaac 392  Q
    ||||||||||||| ||||||||||||||||||| |||  ||| | ||||||||||| |  ||||| |||| | ||||  ||||||||||||||    
T  28300194 gtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaaccccggcccctgcacaaattatcattggtagctaccaac 28300102  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 391
Target Start/End: Complemental strand, 42445863 - 42445770
Alignment:
Q  299 tagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaa-cctcacccctacacataatatctctggtagctaccaa 391  Q
    ||||||||||||||| ||||||||||| | || || |||| ||| ||| ||||||| ||| ||| || |||| | |||||||| ||||||||||    
T  42445863 tagtggctagattcacacacattatgtgtagaaaagtggataattcagagttcgaaccctgaccgctgcacaaattatctctgatagctaccaa 42445770  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 19756417 - 19756461
Alignment:
Q  289 tcaggtaatctagtggctagattcaaacacattatgtatggagaa 333  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||    
T  19756417 tcaggtagcctagtggctagattcacacacattatgtgtggagaa 19756461  T

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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 392
Target Start/End: Complemental strand, 35968 - 35872
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctggtagctaccaac 392  Q
    ||||||||||||||||| | ||||||||| | ||||||||| ||||   ||||||| ||| | |||||| |||| | |||||||| |||||||||||    
T  35968 tctagtggctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagctaccaac 35872  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 391
Target Start/End: Original strand, 21023683 - 21023778
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctggtagctaccaa 391  Q
    ||||||| | ||||||| ||||||||||| ||||||| |||| ||| | ||||||||| ||||   |||||||| | |||| ||||||||||||||    
T  21023683 tctagtgacaagattcacacacattatgtgtggagaagtggagaatccggggttcgaatctcagttcctacacaaattatccctggtagctaccaa 21023778  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 392
Target Start/End: Original strand, 7326328 - 7326424
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcg-aacctcacccctacacataatatctctggtagctaccaac 392  Q
    ||||||||||| ||||| ||||||||||| ||||||| |||  |||  |||||||| ||||  |||||| | || | |||| |||||||||||||||    
T  7326328 tctagtggctaaattcacacacattatgtgtggagaagtggggaatctagggttcgaaacccgacccctgctcaaattatccctggtagctaccaac 7326424  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 37123676 - 37123631
Alignment:
Q  288 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 333  Q
    |||| ||| ||||||||||||||||| ||||||||||| |||||||    
T  37123676 atcaagtagtctagtggctagattcacacacattatgtgtggagaa 37123631  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 8915675 - 8915639
Alignment:
Q  297 tctagtggctagattcaaacacattatgtatggagaa 333  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  8915675 tctagtggctagattcacacacattatttatggagaa 8915639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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