View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21415_low_3 (Length: 568)
Name: NF21415_low_3
Description: NF21415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21415_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 17 - 560
Target Start/End: Complemental strand, 48961722 - 48961179
Alignment:
| Q |
17 |
acaatcaattcaaacactatcttcgaatcaaatattgcgaccatcaacatgttccttcacatggtagccttcaccaaatggcttctttgagagagaaaga |
116 |
Q |
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| T |
48961722 |
acaatcaattcaaacactatcttcgaatcaaatattgcaaccatcaacattttccttcacatggtagccttcaccaaatggcttctttgagagagaaaga |
48961623 |
T |
|
| Q |
117 |
cgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgtacattgctgttcatgtatgcagccattggaattgaag |
216 |
Q |
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| T |
48961622 |
cgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgtacattgctgttcatgtatgcagccattggaattgaag |
48961523 |
T |
|
| Q |
217 |
attttgttcttcctttgttattcttatctttcttgtttatttttccttcatcagcacttgaactctcagattcaccaccatcaactttgattgtgttccc |
316 |
Q |
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| T |
48961522 |
attttgttcttcctttgttattcttatctttcttgtttatttttccttcatcagcacttgaactctcagattcaccaccgtcaactttgattgtgttccc |
48961423 |
T |
|
| Q |
317 |
cttcttgtgaagataattgggttggtgtttcttttgggattgaactagttccatataggctcctctgttttcccctgcaattgttatcactctcatgcca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48961422 |
cttcttgtgaagataattgggttggtgtttcttttgggattgaactagttccatataggctcctctgttttcccctgcaattgttatcactctcatgcca |
48961323 |
T |
|
| Q |
417 |
gagtcctcagaatctgaaaactttttctccttgctggattctcttcctttcacagtaatgtgttttccatgatgggaagaattgctgtgattttgagtct |
516 |
Q |
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| T |
48961322 |
gagtcctcagaatctgaaaactttttctccttgctggattctcttcctttcacagtaatgtgttttccatgatgggaagaattgctgtgattttgagtct |
48961223 |
T |
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| Q |
517 |
gcctatggaattcaccattgctgtgattttgattctccctatgc |
560 |
Q |
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| T |
48961222 |
gcctatggaattcaccattgctgtgattttgattctccctatgc |
48961179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 196
Target Start/End: Complemental strand, 9486046 - 9485931
Alignment:
| Q |
81 |
tagccttcaccaaatggcttctttgagagagaaagacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgta |
180 |
Q |
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||||||| |||||||||||||||||| || | ||| |||| ||||||||||| |||| ||||||||||| | | | || ||||| |||||||| | |
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| T |
9486046 |
tagcctttaccaaatggcttctttgaaagtgtaagttgcacccctggatcatggtgggtacaagaagcatgtaataacaatgaattattcacacactgca |
9485947 |
T |
|
| Q |
181 |
cattgctgttcatgta |
196 |
Q |
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| T |
9485946 |
cattgctattcatgta |
9485931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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