View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21415_low_7 (Length: 279)
Name: NF21415_low_7
Description: NF21415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21415_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 43294630 - 43294374
Alignment:
| Q |
5 |
tgtcgaag-aatatgtaagttctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattcc |
103 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43294630 |
tgtcgaagtaatatgtaagttctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattcc |
43294531 |
T |
|
| Q |
104 |
ctttctatcttagtttctatatctttaccactttcaccatataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43294530 |
ctttctatcttagtttctatatctttaccactttcaccatataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaac |
43294431 |
T |
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| Q |
204 |
ttatacttgagttatagtgactagtgagtgagtagtaaggataagaatataggtgttaagt |
264 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43294430 |
ttatacttgagttatagtgactagt----gagtagtaaggataagaatataggtgttaagt |
43294374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 44026322 - 44026578
Alignment:
| Q |
5 |
tgtcgaag-aatatgtaagttctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattcc |
103 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44026322 |
tgtcgaagtaatatgtaagttctttaatctgtatgctgaaaatcgacttcgtttactttatcagtgtccaatatatataactattacacattcttattcc |
44026421 |
T |
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| Q |
104 |
ctttctatcttagtttctatatctttaccactttcaccatataatatattattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44026422 |
ctttctatcttagtttctatatctttaccactttcaccatataatataatattcttcgtatcaaatcattacttgcctagtgtcgcaactcgcatgcaac |
44026521 |
T |
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| Q |
204 |
ttatacttgagttatagtgactagtgagtgagtagtaaggataagaatataggtgttaagt |
264 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44026522 |
ttatacttgagttatagtgact----agtgagtagtaaggataagaatataggtgttaagt |
44026578 |
T |
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