View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21416_high_6 (Length: 430)
Name: NF21416_high_6
Description: NF21416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21416_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 412
Target Start/End: Complemental strand, 30768770 - 30768369
Alignment:
| Q |
11 |
caaagggcacatgaatcataacaacaacacttaaactttattagttttaaaactcatcgttacaaaaccggttgtagggtgaggagtgactctctttata |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768770 |
caaagggcacatgaatcataacaacaacacttaaactttattagttttaaaactcatcgttacaaaaccggttgtagggtgaggagtgactctctttata |
30768671 |
T |
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| Q |
111 |
agcactttccggttagacttgcatttctccaaataaaaacacactcattatcaatatcctcatcaataagcccaaaaccaaccccaccaaatagaaacaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768670 |
agcactttccggttagacttgcatttctccaaataaaaacacactcattatcaatatcctcatcaataagcccaaaaccaaccccaccaaatagaaacaa |
30768571 |
T |
|
| Q |
211 |
ctttccatagaaagcatagagaaggtgagaactagggatgaggagtactggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggt |
310 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768570 |
cttttcatagaaagcatagagaaggtgggaactagggatgaggagtactggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggt |
30768471 |
T |
|
| Q |
311 |
aaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768470 |
aaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaag |
30768371 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
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|| |
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| T |
30768370 |
at |
30768369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 411
Target Start/End: Complemental strand, 39077495 - 39077344
Alignment:
| Q |
260 |
ggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggtaaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatc |
359 |
Q |
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|||||||| ||||||||||| ||||||| ||||| || | || || |||| |||||| | || || ||||| ||||| | ||||||||||| |||| |
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| T |
39077495 |
ggaggagaaatagttcaagttcaaggaggccacattgtaagggcgacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatc |
39077396 |
T |
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| Q |
360 |
gcagggttcgactctcagcacacacagccatcgaattctacgatgttcaaga |
411 |
Q |
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| | |||||| | |||||||||||||| || ||||||| ||||||||||| |
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| T |
39077395 |
gacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaaga |
39077344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 44573423 - 44573371
Alignment:
| Q |
61 |
aactcatcgttacaaaaccgg-ttgtagggtgaggagtgact-ctctttataa |
111 |
Q |
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|||||||| |||||||||||| ||||||||||||||||| || |||||||||| |
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| T |
44573423 |
aactcatccttacaaaaccggcttgtagggtgaggagtgcctcctctttataa |
44573371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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