View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21416_high_8 (Length: 354)
Name: NF21416_high_8
Description: NF21416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21416_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 1836950 - 1837306
Alignment:
| Q |
1 |
tggttaggaagtttcgagacaccagagatggcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaac |
100 |
Q |
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| T |
1836950 |
tggttaggaagtttcgagacaccagagatggcagcggctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaac |
1837049 |
T |
|
| Q |
101 |
ttgcaaacactcttcctcgtcctctaagcaacaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagag------ccaacatgtt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1837050 |
ttgcaaacactcttcctcgtcctctaagcaacaatgctgaccacattcgaatggcagcacatgaagccgccttgaggttgagagccaacaccaacatgtt |
1837149 |
T |
|
| Q |
195 |
ggcgccaccagataacaacagtggaacag---gctcagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcg |
291 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1837150 |
ggcgccactagataacaacagtggaacaggctgctcagccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcg |
1837249 |
T |
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| Q |
292 |
attaatgattcgcctatggattctcctcctacatggatgcaaatgtcacaccccttt |
348 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1837250 |
attaacgattcgcctatggattctcctcctacatggatgcaaatgtcacaccccttt |
1837306 |
T |
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