View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21416_low_1 (Length: 1349)

Name: NF21416_low_1
Description: NF21416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21416_low_1
NF21416_low_1
[»] chr4 (13 HSPs)
chr4 (20-312)||(48658001-48658282)
chr4 (304-520)||(48657608-48657823)
chr4 (592-865)||(48657271-48657542)
chr4 (932-1076)||(48657059-48657204)
chr4 (966-1075)||(3329846-3329958)
chr4 (966-1075)||(53619436-53619548)
chr4 (966-1071)||(50001075-50001183)
chr4 (969-1032)||(41372259-41372322)
chr4 (974-1075)||(4419122-4419225)
chr4 (958-1013)||(9514049-9514104)
chr4 (970-1075)||(55933605-55933713)
chr4 (975-1075)||(31846962-31847065)
chr4 (966-1035)||(12917899-12917968)
[»] chr3 (6 HSPs)
chr3 (1242-1349)||(26276827-26276934)
chr3 (1000-1123)||(26276499-26276625)
chr3 (1178-1245)||(26276681-26276748)
chr3 (970-1075)||(26772612-26772720)
chr3 (977-1075)||(39583374-39583475)
chr3 (989-1075)||(32546668-32546757)
[»] chr6 (4 HSPs)
chr6 (966-1069)||(17249456-17249562)
chr6 (966-1073)||(7749331-7749441)
chr6 (967-1075)||(33220856-33220967)
chr6 (966-1029)||(32531042-32531105)
[»] chr1 (3 HSPs)
chr1 (966-1075)||(5453945-5454057)
chr1 (966-1075)||(34644416-34644528)
chr1 (966-1037)||(47459533-47459603)
[»] chr5 (6 HSPs)
chr5 (966-1075)||(430452-430564)
chr5 (970-1076)||(33692198-33692305)
chr5 (966-1046)||(2917538-2917618)
chr5 (966-1034)||(27336545-27336613)
chr5 (968-1075)||(35310300-35310410)
chr5 (966-1075)||(13167055-13167167)
[»] chr7 (4 HSPs)
chr7 (966-1045)||(38766174-38766253)
chr7 (966-1035)||(38832152-38832221)
chr7 (975-1076)||(45003041-45003145)
chr7 (968-1075)||(5825125-5825235)
[»] chr2 (4 HSPs)
chr2 (966-1075)||(28224850-28224962)
chr2 (966-1030)||(38723985-38724049)
chr2 (974-1045)||(27494169-27494240)
chr2 (958-995)||(29311033-29311070)
[»] scaffold0009 (1 HSPs)
scaffold0009 (989-1075)||(102979-103068)
[»] chr8 (2 HSPs)
chr8 (966-1071)||(39434519-39434625)
chr8 (966-1075)||(42659077-42659189)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-136; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 48658282 - 48658001
Alignment:
Q  20 tatcttttatagatttcaagcggaagataacttccgatagcattgaaatgtaacttccaataggtttccaagaggcattttcaaaattttggaggctttt 119  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||           |||||||||||||||||||||||||    
T  48658282 tatcttttatagatttcaagcggaacataacttccgattgcattgaaatgtaacttccaatagg-----------cattttcaaaattttggaggctttt 48658194  T
Q  120 gagcaatatgggaggcctaaacagcaaatttcaaggcttgagcttcaaaactaataagtggaccaaactgaaatgggccgtcaaaaatgttgttattaaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48658193 gagcaatatgggaggcctaaacagcaaatttcaaggcttgagcttcaaaactaataagtggaccaaactgaaatgggccgtcaaaaatgttgttattaaa 48658094  T
Q  220 cccaaaataaaagattagactgatttttacaccctgtacctaattcttgccctgcagaagtttttaaatatttggtaagggatataacaaaaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48658093 cccaaaataaaagattagactgatttttacaccctgtacctaattcttgccctgcagaagtttttaaatatttggtaagggatataacaaaaa 48658001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-106
Query Start/End: Original strand, 304 - 520
Target Start/End: Complemental strand, 48657823 - 48657608
Alignment:
Q  304 taacaaaaatcagtttggaattttagtaaaatttttcagttgagcatattatggctatgggttaatataactacacttcttatggctatggctatggcta 403  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48657823 taacaaaaatcagtttggaattttagtaaaatttt-cagttgagcatattatggctatgggttaatataactagacttcttatggctatggctatggcta 48657725  T
Q  404 taggttttcatattaatggaatggaatgttggaagtctattccagctaatgtgcttggactttatgagtttagattttgctattcatgttttttcgattg 503  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48657724 taggttttcatattaatggaatggaatggtggaagtctattccagctaatatgcttggactttatgagtttagattttgctattcatgttttttcgattg 48657625  T
Q  504 tgtctattgacattgta 520  Q
    |||||||||||||||||    
T  48657624 tgtctattgacattgta 48657608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 592 - 865
Target Start/End: Complemental strand, 48657542 - 48657271
Alignment:
Q  592 aatgagacaattgcatattatttgttcgattgttatcttgggttttagtctagcatctccaagatcttgtttcatcnnnnnnnnnnnnacgaacaaaatt 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||            ||||||||||||    
T  48657542 aatgagacaattgcatattatttgttcgattgttatcttgggttttagtctagcatctccaagatcttatttcatctttttattttttacgaacaaaatt 48657443  T
Q  692 tttagggtgctgcaaatgatattcaatagttttgagatgtcaaggcttccatgtaatgcttttgcactctannnnnnnncttccctaaaagcagaggatc 791  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||  ||||||| | |||| |    
T  48657442 tttagggtgctgcaaatgatattcaatagttttgagatgtcaaggcttccatgtaatgcttttgcactctattttttt--tttactaaaagaaaaggaac 48657345  T
Q  792 tactacacttttttacgggaaaataactatacattgacttttcttnnnnnnnttataaaattttgtatgaataa 865  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  48657344 tactacacttttttacgggaaaataactatacattgacttttcttaaaaaaattataaaattttgtatgaataa 48657271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 932 - 1076
Target Start/End: Complemental strand, 48657204 - 48657059
Alignment:
Q  932 ccttgttcttgggttaattttaaattactatacattactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctt 1031  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||| |||    
T  48657204 ccttgttcttgggttaattttaaattactatacattactatcaatattacttatacatgaataggagccaagcaggcaacaag--ccaccactagatctt 48657107  T
Q  1032 tttgaacggcaaa---aaacatcgtaaacacaacattcatggacctat 1076  Q
    |||| ||||||||   || ||||||||||||||||||||| |||||||    
T  48657106 tttggacggcaaaatcaatcatcgtaaacacaacattcatagacctat 48657059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 966 - 1075
Target Start/End: Original strand, 3329846 - 3329958
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaac 1062  Q
    ||||||||||||||||||| || |||||||||| ||||| ||||||||| ||| || ||||||||||||| | ||||||   || ||||||||||||| |    
T  3329846 ttactatcaatattacttacacgtgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcatcgtaaacacagc 3329945  T
Q  1063 attcatggaccta 1075  Q
    |||||||||||||    
T  3329946 attcatggaccta 3329958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 966 - 1075
Target Start/End: Original strand, 53619436 - 53619548
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaac 1062  Q
    ||||||||||||||||||| |||||||||||||  ||| |||||||||| ||| || ||||||||||||| | ||||||   ||   |||||||||||||    
T  53619436 ttactatcaatattacttacacatgaataggaggtaagtaggcaacaagctgcgccgctagacctttttggatggcaaaaccaattctcgtaaacacaac 53619535  T
Q  1063 attcatggaccta 1075  Q
    |||||||||||||    
T  53619536 attcatggaccta 53619548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 966 - 1071
Target Start/End: Complemental strand, 50001183 - 50001075
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaac 1062  Q
    ||||||| ||||||||||| ||||||||||||| ||||| ||||||||| ||| || ||||| ||||||| | ||||||   || | |||||||||||||    
T  50001183 ttactattaatattacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagatctttttggatggcaaaatcaatcttcgtaaacacaac 50001084  T
Q  1063 attcatgga 1071  Q
    ||| |||||    
T  50001083 atttatgga 50001075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 969 - 1032
Target Start/End: Complemental strand, 41372322 - 41372259
Alignment:
Q  969 ctatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagaccttt 1032  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||||| |  ||||||||||    
T  41372322 ctatcaatattacttacacatgaataggaggcaagcagacaacaagttgcgctgctagaccttt 41372259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 974 - 1075
Target Start/End: Original strand, 4419122 - 4419225
Alignment:
Q  974 aatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaaa---aacatcgtaaacacaacattcatgg 1070  Q
    ||||||||||  ||||||||||||| ||||| ||||||||| ||| || |||||  |||||| | |||||||   | |||||||||||||||||||||||    
T  4419122 aatattacttgcacatgaataggaggcaagcgggcaacaagctgcgccgctagat-tttttggatggcaaaaccaatcatcgtaaacacaacattcatgg 4419220  T
Q  1071 accta 1075  Q
    |||||    
T  4419221 accta 4419225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 958 - 1013
Target Start/End: Complemental strand, 9514104 - 9514049
Alignment:
Q  958 actatacattactatcaatattacttatacatgaataggagtcaagcaggcaacaa 1013  Q
    ||||||||||||||||||||||||||| | |||||||||||  ||| |||||||||    
T  9514104 actatacattactatcaatattacttacatatgaataggaggtaagtaggcaacaa 9514049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 970 - 1075
Target Start/End: Complemental strand, 55933713 - 55933605
Alignment:
Q  970 tatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaaa---aacatcgtaaacacaacattc 1066  Q
    ||||||||||||||  ||||||||||||| ||||| | ||||||  |||  | |||||| |||||| | |||||||   | |||||||||||||||||||    
T  55933713 tatcaatattacttgcacatgaataggaggcaagcggacaacaaactgcgtcgctagacttttttggatggcaaaatcaatcatcgtaaacacaacattc 55933614  T
Q  1067 atggaccta 1075  Q
    | |||||||    
T  55933613 acggaccta 55933605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 975 - 1075
Target Start/End: Original strand, 31846962 - 31847065
Alignment:
Q  975 atattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaacattcatgga 1071  Q
    |||||||||| ||||||||||||| ||||| ||||||||  ||| || ||||||||||||| | |||| |   || | |||  |||||||||||||||||    
T  31846962 atattacttacacatgaataggaggcaagcgggcaacaacctgcgccgctagacctttttggatggcataacgaatcctcgctaacacaacattcatgga 31847061  T
Q  1072 ccta 1075  Q
    ||||    
T  31847062 ccta 31847065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 966 - 1035
Target Start/End: Original strand, 12917899 - 12917968
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttg 1035  Q
    |||||||||||||||||||  |||||||| ||| ||||||| ||| ||||||  ||  ||||||||||||    
T  12917899 ttactatcaatattacttactcatgaataagaggcaagcagacaataagttgtgccgttagacctttttg 12917968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 1e-53; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 1242 - 1349
Target Start/End: Complemental strand, 26276934 - 26276827
Alignment:
Q  1242 ccaaggtcttagataaggggataaacacgacttatgaggatatgatgatataaagtcatttggagcatatagtatgaattagtaatacacctacaagcac 1341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26276934 ccaaggtcttagataaggggataaacacgacttatgaggatatgatgatataaagtcatttggagcatatagtatgaattagtaatacacctacaagcac 26276835  T
Q  1342 tctttatt 1349  Q
    ||||||||    
T  26276834 tctttatt 26276827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 1000 - 1123
Target Start/End: Original strand, 26276499 - 26276625
Alignment:
Q  1000 caagcaggcaacaagttgcaccactagacctttttgaacggcaaaa---aacatcgtaaacacaacattcatggacctatcttgggtgactacaatgtca 1096  Q
    ||||| ||||||||| | |||| ||||| ||||||| | |||||||   | | || ||||||||||||||||||||||||||||||||||||||||||||    
T  26276499 caagcgggcaacaagctacaccgctagatctttttggatggcaaaatcaatcctcataaacacaacattcatggacctatcttgggtgactacaatgtca 26276598  T
Q  1097 ctttagaaccgatttcaaaaggtgctg 1123  Q
    |||||||||||||||||||||||||||    
T  26276599 ctttagaaccgatttcaaaaggtgctg 26276625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1178 - 1245
Target Start/End: Original strand, 26276681 - 26276748
Alignment:
Q  1178 aatgaacatacattagacactactgatatccaatgagaaaccactatcattccaatgcttttctccaa 1245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  26276681 aatgaacatacattagacactactgatatccaatgagaaaccactatctttccaattcttttctccaa 26276748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 970 - 1075
Target Start/End: Original strand, 26772612 - 26772720
Alignment:
Q  970 tatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaacattc 1066  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||| ||| || ||||||||||||| | ||||||   || | |||||||||||||||||    
T  26772612 tatcaatattacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattc 26772711  T
Q  1067 atggaccta 1075  Q
    |||||||||    
T  26772712 atggaccta 26772720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 977 - 1075
Target Start/End: Complemental strand, 39583475 - 39583374
Alignment:
Q  977 attacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaacattcatggacc 1073  Q
    |||||||| |||||||||| |  ||||||| ||||||||||| || ||||||||||||| | ||||||   || | |||||||||| ||||||||| |||    
T  39583475 attacttacacatgaatagaaagcaagcagacaacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacgacattcatgaacc 39583376  T
Q  1074 ta 1075  Q
    ||    
T  39583375 ta 39583374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 989 - 1075
Target Start/End: Original strand, 32546668 - 32546757
Alignment:
Q  989 tgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaacattcatggaccta 1075  Q
    ||||||| || ||||| ||||||||| ||| || ||||||||||||| | ||||||   || | |||| |||||||||||||||||||||    
T  32546668 tgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatggaccta 32546757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 4e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 966 - 1069
Target Start/End: Complemental strand, 17249562 - 17249456
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaac 1062  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| || ||||||||||||| | ||||||   || | |||||||||||||    
T  17249562 ttactatcaatattacttatacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaac 17249463  T
Q  1063 attcatg 1069  Q
    |||||||    
T  17249462 attcatg 17249456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 966 - 1073
Target Start/End: Original strand, 7749331 - 7749441
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaac 1062  Q
    ||||||||||||||| ||| ||||||||||||| ||||| ||||||||| |||||| ||||||||||| | | ||||||   || | |||||||||||||    
T  7749331 ttactatcaatattagttacacatgaataggaggcaagcgggcaacaagctgcaccgctagaccttttaggatggcaaaaccaatcctcgtaaacacaac 7749430  T
Q  1063 attcatggacc 1073  Q
    |||||||||||    
T  7749431 attcatggacc 7749441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 967 - 1075
Target Start/End: Complemental strand, 33220967 - 33220856
Alignment:
Q  967 tactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaaca 1063  Q
    |||||||||||||||||| ||||||||||||| ||||| | ||||||| ||| || ||||||||||| | | ||||||   ||  ||||||||| |||||    
T  33220967 tactatcaatattacttacacatgaataggaggcaagcggccaacaagctgcgccgctagaccttttaggatggcaaaaccaattatcgtaaacgcaaca 33220868  T
Q  1064 ttcatggaccta 1075  Q
    ||||||||||||    
T  33220867 ttcatggaccta 33220856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 966 - 1029
Target Start/End: Complemental strand, 32531105 - 32531042
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacc 1029  Q
    ||||||||||||||||||| ||||||||| ||| || |||| ||||||| |||||| |||||||    
T  32531105 ttactatcaatattacttacacatgaatatgagacacgcagacaacaagctgcaccgctagacc 32531042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 966 - 1075
Target Start/End: Original strand, 5453945 - 5454057
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaac 1062  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||||| ||| || ||||||||||||| | | ||||   || | | |||||||||||    
T  5453945 ttactatcaatattacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatgacaaaaccaatccttgtaaacacaac 5454044  T
Q  1063 attcatggaccta 1075  Q
    |||||||||||||    
T  5454045 attcatggaccta 5454057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 966 - 1075
Target Start/End: Original strand, 34644416 - 34644528
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaac 1062  Q
    |||||||||||||||  ||||||| ||||||||  |||| ||||||||  ||| || |||||| |||||| | ||||||   || |||||||||||||||    
T  34644416 ttactatcaatattatatatacataaataggaggtaagcgggcaacaaactgcgccgctagacttttttggatggcaaaatcaatcatcgtaaacacaac 34644515  T
Q  1063 attcatggaccta 1075  Q
    |||||||||||||    
T  34644516 attcatggaccta 34644528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 966 - 1037
Target Start/End: Original strand, 47459533 - 47459603
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaa 1037  Q
    |||| ||||||||| |||| ||||||||||||| ||||||| ||||||| |||  | |||||||||||||||    
T  47459533 ttacgatcaatattccttacacatgaataggagccaagcagacaacaagctgc-gcgctagacctttttgaa 47459603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 9e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 966 - 1075
Target Start/End: Original strand, 430452 - 430564
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaac 1062  Q
    ||||||||||||||||||  ||||||||||||| ||||||| | ||||| ||||||  |||||||||||| | |||| |   || | |||||||||||||    
T  430452 ttactatcaatattacttgcacatgaataggaggcaagcagacnacaagctgcaccgatagacctttttggatggcataatcaatcctcgtaaacacaac 430551  T
Q  1063 attcatggaccta 1075  Q
    |||||||||||||    
T  430552 attcatggaccta 430564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 970 - 1076
Target Start/End: Complemental strand, 33692305 - 33692198
Alignment:
Q  970 tatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaaa-aacatcgtaaacacaacattcat 1068  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||| ||| || ||||| ||||||| | || ||||  | |||||||||| |||||||||    
T  33692305 tatcaatattacttacacatgaataggaggcaagcaggcaacaagctgcgccgctagatctttttggatggaaaaaccaaatcgtaaacagaacattcat 33692206  T
Q  1069 ggacctat 1076  Q
    | ||||||    
T  33692205 gaacctat 33692198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 966 - 1046
Target Start/End: Complemental strand, 2917618 - 2917538
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaaaa 1046  Q
    |||||||||||||||| || ||||||||||||| ||||||||||||||  ||| || ||||||||||||| | ||||||||    
T  2917618 ttactatcaatattacctacacatgaataggaggcaagcaggcaacaaactgcgccgctagacctttttggatggcaaaaa 2917538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 966 - 1034
Target Start/End: Original strand, 27336545 - 27336613
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagaccttttt 1034  Q
    ||||||||||||||||||| ||||||||||||| ||||| | ||| ||  |||||| ||||||||||||    
T  27336545 ttactatcaatattacttacacatgaataggagacaagcggacaataaactgcaccgctagaccttttt 27336613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 968 - 1075
Target Start/End: Original strand, 35310300 - 35310410
Alignment:
Q  968 actatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaacat 1064  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||||| |||  |  || |||| |||| | ||||||   ||   |||||||||||||||    
T  35310300 actatcaatattacttacacatgaataggaggcaagcgggcaacaagctgcgtcgttaaacctctttggatggcaaaaccaattctcgtaaacacaacat 35310399  T
Q  1065 tcatggaccta 1075  Q
    |||||||||||    
T  35310400 tcatggaccta 35310410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 966 - 1075
Target Start/End: Complemental strand, 13167167 - 13167055
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttg---aacggcaaaaaacatcgtaaacacaac 1062  Q
    ||||| ||||||||| ||| ||||||||||||| ||||  ||||||||| ||| || ||||| |||||||   ||| | |  || |||||||||| ||||    
T  13167167 ttactttcaatattaattacacatgaataggaggcaagtgggcaacaagctgcgccgctagatctttttggataacagaatcaatcatcgtaaacccaac 13167068  T
Q  1063 attcatggaccta 1075  Q
    |||||||||||||    
T  13167067 attcatggaccta 13167055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 966 - 1045
Target Start/End: Original strand, 38766174 - 38766253
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaaa 1045  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||||| ||| |  ||||||||||||| | |||||||    
T  38766174 ttactatcaatattacttacacatgaataggaggcaagcgggcaacaagctgcgcagctagacctttttggatggcaaaa 38766253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 966 - 1035
Target Start/End: Original strand, 38832152 - 38832221
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttg 1035  Q
    ||||||||||||||||||| | ||||||||||| ||||| ||||||||| ||| || |||||||||||||    
T  38832152 ttactatcaatattacttacatatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttg 38832221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 975 - 1076
Target Start/End: Complemental strand, 45003145 - 45003041
Alignment:
Q  975 atattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaacattcatgga 1071  Q
    |||||||||| ||||||||||||| ||||| | ||| ||| ||| || ||||||||||||| | ||||||   || | |||||||||||||||||||||     
T  45003145 atattacttacacatgaataggaggcaagcggacaataagctgcgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacattcatggt 45003046  T
Q  1072 cctat 1076  Q
    |||||    
T  45003045 cctat 45003041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 968 - 1075
Target Start/End: Original strand, 5825125 - 5825235
Alignment:
Q  968 actatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaacat 1064  Q
    |||||||||||| |||| ||||||||||||| |||||||| |||||| ||| ||   ||||||||||  | ||||||   || | |||||||||||||||    
T  5825125 actatcaatatttcttacacatgaataggaggcaagcaggtaacaagctgcgccgtaagacctttttcgatggcaaaaccaatcctcgtaaacacaacat 5825224  T
Q  1065 tcatggaccta 1075  Q
     ||| ||||||    
T  5825225 ccatagaccta 5825235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 966 - 1075
Target Start/End: Original strand, 28224850 - 28224962
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaa---aaaacatcgtaaacacaac 1062  Q
    ||||||||||||||||||| | ||||||||||| ||||| ||||| ||| ||| || ||||||||||||| | |||||   ||| | || ||||||||||    
T  28224850 ttactatcaatattacttacaaatgaataggagacaagcgggcaataagctgcgccgctagacctttttggatggcaaaacaaatcttcataaacacaac 28224949  T
Q  1063 attcatggaccta 1075  Q
    |||||| ||||||    
T  28224950 attcattgaccta 28224962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 966 - 1030
Target Start/End: Complemental strand, 38724049 - 38723985
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacct 1030  Q
    ||||||||||||||||||| |||| |||||||| |||||  |||||||| |||||| ||||||||    
T  38724049 ttactatcaatattacttacacataaataggaggcaagcgagcaacaagctgcaccgctagacct 38723985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 974 - 1045
Target Start/End: Original strand, 27494169 - 27494240
Alignment:
Q  974 aatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaaa 1045  Q
    ||||||||||| | ||||||||||| ||||||||||||||| ||| ||  |||||||||||| | |||||||    
T  27494169 aatattacttacatatgaataggaggcaagcaggcaacaagctgcgccgttagacctttttggatggcaaaa 27494240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 958 - 995
Target Start/End: Complemental strand, 29311070 - 29311033
Alignment:
Q  958 actatacattactatcaatattacttatacatgaatag 995  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  29311070 actatacattactatcaatattacttatatatgaatag 29311033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 989 - 1075
Target Start/End: Original strand, 102979 - 103068
Alignment:
Q  989 tgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaacattcatggaccta 1075  Q
    ||||||| || ||||| ||||||||||||| || ||||||||||||| | ||||||   || | ||||||||||||||||||||||||||    
T  102979 tgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatggaccta 103068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 966 - 1071
Target Start/End: Original strand, 39434519 - 39434625
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaac 1062  Q
    ||||||||||||||||||| ||||||||||||| |  ||  |||||||| ||| || ||||||||||||| | ||||||   || | |||||||||||||    
T  39434519 ttactatcaatattacttacacatgaataggaggc--gctagcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaac 39434616  T
Q  1063 attcatgga 1071  Q
    |||||||||    
T  39434617 attcatgga 39434625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 966 - 1075
Target Start/End: Original strand, 42659077 - 42659189
Alignment:
Q  966 ttactatcaatattacttatacatgaataggagtcaagcaggcaacaagttgcaccactagacctttttgaacggcaaa---aaacatcgtaaacacaac 1062  Q
    ||||||||||||||||||| ||| ||||||||| ||||| | |||||||||  |||  |||||||||||| | | ||||   || | |||||||||||||    
T  42659077 ttactatcaatattacttacacaagaataggaggcaagcggacaacaagttataccgttagacctttttggatgacaaaattaatcctcgtaaacacaac 42659176  T
Q  1063 attcatggaccta 1075  Q
    ||||||| |||||    
T  42659177 attcatgaaccta 42659189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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