View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21416_low_2 (Length: 685)
Name: NF21416_low_2
Description: NF21416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21416_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 13 - 669
Target Start/End: Original strand, 36524465 - 36525125
Alignment:
| Q |
13 |
tgaaaagggaatcggagaaagttagagaagaagttgaaaaggagagagaaatgcttcagttagctgacattttgcgcgaagaacgagtccatatgaagct |
112 |
Q |
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| T |
36524465 |
tgaaaagggaatcggagaaagttcgagaagaagttgaaaaggagagagaaatgcttcagttagccgacattttgcgcgaagaacgagtccatatgaagct |
36524564 |
T |
|
| Q |
113 |
ctcagaagccaaatatcaatttgaagagaaaagtgcaatgctagaaattctaagaaatgagcttgagaactttataagaaataaagaaga---gaaaggt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36524565 |
ctcagaagccaaatatcaatttgaagagaaaagtgcaatgctagaaattctaagaaatgagcttgagaactttataagaaataaagaagaagagaaaggt |
36524664 |
T |
|
| Q |
210 |
gatgatattgatgttaatccagggcttaataaactcaaggatcttgaattctatttgaacaaaacatttttggaattccaaaatctagatgaagataata |
309 |
Q |
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| T |
36524665 |
gatgatattgatgttaatccagggcttaagaaactcaaggatcttgaattctatttgaacaaaacatttttggaattccaaaatctagatgaagataata |
36524764 |
T |
|
| Q |
310 |
attcaattgagcatgaagatgagtcagttgagagtgatcctcaatcaattgaattgaatatggacaatgacaaaa-aagctacaagtggagttcttcttg |
408 |
Q |
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| T |
36524765 |
attcaattgagcatgaagatgagtcagttgagagtgatcttcaatcaattgaattgaatatggacaatgacaaaaaaagctacaagtggagttcttcttg |
36524864 |
T |
|
| Q |
409 |
tgagaatattccactttttgaggcaaaaagagtttcaattgataaagatatagggagaagatcttttaaagattggggaagtatttgcttcaacaaggga |
508 |
Q |
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| T |
36524865 |
tgagaatattccactttttgaggcaaaaagagtttcaattgataaagatatagggagaagatcttttaaagattggggaagtatttgcttcaacaaggga |
36524964 |
T |
|
| Q |
509 |
actacaaatagtactaaaaagaaggactttgttggtataaatattcaagaaagttttgatcagcttgaaagtggacaatcaattgaatttatttttggag |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36524965 |
actacaaatagtactaaaaagaaggactttgttggtataaatattcaagaaagttttgatcagcttgaaagtggacaatcaattgaatttatttttggag |
36525064 |
T |
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| Q |
609 |
atgaaatacaagaagaaaatgagggttatacctataagcctatgagtctaagagaccatat |
669 |
Q |
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| T |
36525065 |
atgaaatacaagaagaaaatgagggttatacctataagcctatgagtctaagagaccatat |
36525125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 18971212 - 18971032
Alignment:
| Q |
12 |
atgaaaagggaatcggagaaagttagagaagaagttgaaaaggagagagaaatgcttcagttagctgacattttgcgcgaagaacgagtccatatgaagc |
111 |
Q |
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||||||| ||| |||| |||||| | ||||| || ||||||||||| ||||||||||||||||| || |||||||||| || ||||||| ||||||| |
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| T |
18971212 |
atgaaaaaggagtcggttaaagttcgtgaagaggtggaaaaggagagggaaatgcttcagttagcggatgttttgcgcgaggagagagtccagatgaagc |
18971113 |
T |
|
| Q |
112 |
tctcagaagccaaatatcaatttgaagagaaaagtgcaatgctagaaattctaagaaatgagcttgagaactttataagaa |
192 |
Q |
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| T |
18971112 |
tttcagaggccaagtatcaattcgaagagaaaaatgattttgtagaaaagctaagaaatgagcttgaagactttatgagaa |
18971032 |
T |
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