View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21416_low_4 (Length: 515)
Name: NF21416_low_4
Description: NF21416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21416_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 30654396 - 30654067
Alignment:
| Q |
16 |
gcaggaccaaacaccacccaccagcggtccatccccatagatcaaaaatatcccataacaacagaaaccagacctgttgaggaaaaattatatagaatca |
115 |
Q |
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| T |
30654396 |
gcaggaccaaacaccacccaccagcagttcatcaccatatatcaaaaataccccataacaacataaactagacctgttaaggaaaaattagatagaatta |
30654297 |
T |
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| Q |
116 |
gaagtcaggaattcaactgaattgagttcaaaacagtaacacacgcgagctaaacaacaa---caaactccaaaacagtaggcatctaatcacatctgga |
212 |
Q |
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| T |
30654296 |
gaagtcagaacttcaactgaattgagttcaaaacagtaacgcacgctagctaaacaacaacatcaaaccccaaaactgtaggcatctaatcacatttgga |
30654197 |
T |
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| Q |
213 |
ggcaactaacaaaaagtttgcaacatgctaaaagctatagcagtaagacaaagtagaaaccagtcgagattccaaagcagatgcagaaaaactagacata |
312 |
Q |
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| T |
30654196 |
ggcaactaa-gaaaagagtgcaacatgccaaaagctat---gttgcgattgcgt-------agtcgagattgcgcagcagaggcagaaaaactagacaga |
30654108 |
T |
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| Q |
313 |
attgtatcgaaaatctcagcatagactcccaagaagccatc |
353 |
Q |
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| T |
30654107 |
attgtatcgaaaatctcagcatagactcccaacaagccatc |
30654067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 410 - 476
Target Start/End: Complemental strand, 10868817 - 10868751
Alignment:
| Q |
410 |
ttatagttctaatcacataactcacaaaattgaagctggattatactacatatatatcatccctaca |
476 |
Q |
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| T |
10868817 |
ttatagttctaatcacataactcacaaaactgaagctggattatattgcatatataccagccctaca |
10868751 |
T |
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