View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21416_low_5 (Length: 430)
Name: NF21416_low_5
Description: NF21416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21416_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 109 - 412
Target Start/End: Complemental strand, 24362946 - 24362643
Alignment:
| Q |
109 |
aacttcaagcactggtcaattcttatgatgtgtatttgtgtgaaggttttaggatttgtggacacgaatcctatcacatattctctatagtctacagtat |
208 |
Q |
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| T |
24362946 |
aacttcaagcactggtcaattcttatgatgtgtatttgtgtgaaggttttaggatttgtggacacgaatcctatcacatattctctatagtctacagtat |
24362847 |
T |
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| Q |
209 |
ctactaaatttgtgattaatcattatattatttgaagtcaaagcaatatgatgtgtagttaacgacatgaattggatctctgaggtggacaaatggtact |
308 |
Q |
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| T |
24362846 |
ctactaaatttgtgattaatcattatattatttgaagtcaaagcaatatgatgtgtagttaacgacatgaattggatctctgaggtggacaaatggtact |
24362747 |
T |
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| Q |
309 |
ttgttttcttcctttattttaagnnnnnnnctacctacacccaaacaaatatcctctgttacaaatcacaattcttaataccaaagaaaatcctttgtga |
408 |
Q |
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| T |
24362746 |
ttgttttcttcctttatttgaagtttttttctacctacacccaaacaaatatcctctgttacaaatcacaattcttaatgccaaagaaaatcctttgtga |
24362647 |
T |
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| Q |
409 |
caca |
412 |
Q |
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|||| |
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| T |
24362646 |
caca |
24362643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 24363028 - 24363109
Alignment:
| Q |
34 |
caaacatttaca-tttacttatacgtatgtactacatctttgaatattactagccataagctaaaatttgttataaaacttc |
114 |
Q |
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|||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24363028 |
caaacatttacaatttacttatacatacgtactacatctttgaatattactagccataagctaaaatttgttataaaacttc |
24363109 |
T |
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