View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21416_low_7 (Length: 355)
Name: NF21416_low_7
Description: NF21416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21416_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 46 - 319
Target Start/End: Complemental strand, 31944049 - 31943770
Alignment:
| Q |
46 |
ttgtgttttcttatattttacttgatttcatgagtttggtccttnnnnnnnn---tgttgaatgtttgctgttttaggatttatttctatgattgcatgt |
142 |
Q |
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| T |
31944049 |
ttgtgttttcttatattttacttgatttcatgagtttagtccttcaaaaaaaaaatgttgaatgtttgctgttttaggatttatttctatgattacatgt |
31943950 |
T |
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| Q |
143 |
tgaaaattcggtgtttatgttattttgtttgattt-atgttgaaagnnnnnnnnnnn--agggtttatttcttcacatgttgaaaattttgttttcaggg |
239 |
Q |
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| T |
31943949 |
tgaaaattcggtgtttatgttattttgtttgattttatgttgaaagtttttttttttttagggtttatttcttcatatgttgaaaattttgttttcaggg |
31943850 |
T |
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| Q |
240 |
tttatttcttcatgttggaaattatattttaattgacatgatttcatgctgaaaattgtttgttttatggttcatttctt |
319 |
Q |
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| T |
31943849 |
tttatttcttcatgttggaaattatattttaattgacatgatttcttgctgaaaattgtgtgttttatggttcatttctt |
31943770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 216 - 333
Target Start/End: Complemental strand, 1341981 - 1341862
Alignment:
| Q |
216 |
atgttgaaaattttgttttc-agggtttatttcttcatgttggaaattatattttaatt-gacatgatttcatgctgaaaattgtttgttttatggttca |
313 |
Q |
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| T |
1341981 |
atgttcaaaattttgttttttagggtttatttcttcttgttggaaattaaatttttctttgacatgatttcttgcttaaaattgtgtgttttatggttca |
1341882 |
T |
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| Q |
314 |
tttcttgtggaaaatttggt |
333 |
Q |
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| T |
1341881 |
tttcttgtggaatatttggt |
1341862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 1342061 - 1341983
Alignment:
| Q |
98 |
tgttgaatgtttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgt-ttatgttattttgtttgattt |
177 |
Q |
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| T |
1342061 |
tgttgaaattttggtgttttagggtttatttctttgattgcatgttgaaaatt--gtgtattatgttattttgtttgattt |
1341983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 9394534 - 9394445
Alignment:
| Q |
98 |
tgttgaatgtttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgtttatgttattttgtttga-tttatgttgaaa |
186 |
Q |
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| T |
9394534 |
tgttgaaaatttgatgttttagggtttatttctttgatttcatgttggcaactgtgtttttatgttattttgtttgattttatgttgaaa |
9394445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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