View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21416_low_9 (Length: 349)
Name: NF21416_low_9
Description: NF21416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21416_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 4 - 333
Target Start/End: Complemental strand, 42338245 - 42337916
Alignment:
| Q |
4 |
catggattgtatgtgtccttaaaagttagcaccgccaccacccatcatgtgtcgagttatgttcaaagactaaacattaacaccacatatctatcaggac |
103 |
Q |
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| T |
42338245 |
catggattgtatgtgtccttaaaagttagcaccgctaccacccatcatatgtcgagttatgttcaaagattaaagattaacaccacatatctatcaggac |
42338146 |
T |
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| Q |
104 |
caatgtcatttttaggtaaatcaaaattaaaactagggttgtcattttgaannnnnnng-cgacttgttcttattgttgttgtatggtttttgtggaatc |
202 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||| || |
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| T |
42338145 |
caatgtcatttttaggtaaatcaaaattaaaattagggttatcattt-gaatttttttgtcgacttgttcttattgttgttgtatggtttttgtggactc |
42338047 |
T |
|
| Q |
203 |
cgtagctcagcgtgcatctttgatttttctggccttttgatcaaaacactcggctcaacatttcgtgaaaccgttaccttcacttgttcatcatctatcc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42338046 |
cgtagctcagcgtgcatctttgatttttctggccttttgatcaaaacactcgggtcaacatttcgtgaaaccgttaccttaacttgttcatcatctatcc |
42337947 |
T |
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| Q |
303 |
ttgttttatatactcttgtcaatcattaatc |
333 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42337946 |
ttgttttatatactcttgtcaatcattaatc |
42337916 |
T |
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