View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21417_high_10 (Length: 341)
Name: NF21417_high_10
Description: NF21417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21417_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 32117402 - 32117551
Alignment:
| Q |
19 |
gaagcatgattgaataggcatgactagctaagaagaagatcaacatnnnnnnnnnnnnnntaaatagaattatccttccattcaactactattcaatttt |
118 |
Q |
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| T |
32117402 |
gaagcatgattgaataggcatgactagctaagaagaagatcaacataaaaaggaaaaaaataaacagaattatccttccattcaactactattcaatttt |
32117501 |
T |
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| Q |
119 |
aggaaatcca--------ttcttaaaacaatcgctaagaaaataaattta |
160 |
Q |
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| T |
32117502 |
aggaaatgcaaatgaatgtccttaaaacaatcgctaagaaaataaattta |
32117551 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 32118651 - 32118709
Alignment:
| Q |
158 |
ttatctaatgaaataagattatgnnnnnnncctaacaaaataagcttgaattacctttc |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
32118651 |
ttatctaatgaaataagattatgtttttttcctaacaaaataagcttgaattgcctttc |
32118709 |
T |
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