View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21417_high_7 (Length: 380)
Name: NF21417_high_7
Description: NF21417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21417_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 43 - 342
Target Start/End: Original strand, 4823442 - 4823741
Alignment:
| Q |
43 |
aagccaaatacttctttgaccaagaccctctttatttatttctttgcctccaaattttccataagttagactcatttgaatcaaacttgaagcctcaaat |
142 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4823442 |
aagccaaatacttttttgaccaagaccctctttatttatttctttgcctccaaattttccataagttagactcatttgaatcaaacttgaagcctcaaat |
4823541 |
T |
|
| Q |
143 |
tttgacttaagaaaagaagtaatgttttaagccatgaaggaagtggcttacaaattgaatgaacaatgaaactaatgttttaagcttcaattgaatgctg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4823542 |
tttgacttaagaaaagaagtaatgttttaagccatgaaggaagtggtttacaaattgaatgaacaatgaaactaatgttttaagcttcaattgaatgctg |
4823641 |
T |
|
| Q |
243 |
attttctcctattatcatatatcttctgaaaatcacggtgatagagccgcaattgcagtcgcaaaatcctaaactatcttaatgttgcgatccagatcgt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4823642 |
attttctcctattatcatatatcttctgaaaatcacggtgatagagccgcaattgcagtcgcaaaatcctaaactatcttaatgttgcgatccagatcgt |
4823741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 87 - 341
Target Start/End: Original strand, 4817263 - 4817491
Alignment:
| Q |
87 |
tgcctccaaattttccataagttagactcatttgaatcaaacttgaagcctcaaattttgacttaagaaaag-aagtaatgttttaagccatgaaggaag |
185 |
Q |
| |
|
||||||||||||| |||| ||||| | ||||||||||||| ||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
4817263 |
tgcctccaaatttcccattagttacattcatttgaatcaatcttcaagccgcaaattttgacttaaaaaaaggaagtaatgttttaagccatga------ |
4817356 |
T |
|
| Q |
186 |
tggcttacaaattgaatgaacaatgaaactaatgttttaagcttcaattgaatgctgattttctcctattatcatatatcttctgaaaatcacggtgata |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4817357 |
---------------atgaacaatgaaactaatgttttaagcttcgactgaatgctggttttctcctattatcatatatcttctgaaaatcacggtgata |
4817441 |
T |
|
| Q |
286 |
gagccgcaattgcagtcgcaaaatcctaaactatcttaatgttgcgatccagatcg |
341 |
Q |
| |
|
||||||||| || ||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
4817442 |
cagccgcaatcgcggtcacaa------aaataatcttaatgttgcgatccagatcg |
4817491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 4813762 - 4813824
Alignment:
| Q |
87 |
tgcctccaaattttccataagttagactcatttgaatcaaacttgaagcctcaaattttgact |
149 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4813762 |
tgcctccaaatttctcataagttacactcatttgaatcaaacttgaagcctcaaattttgact |
4813824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 341 - 380
Target Start/End: Original strand, 4823892 - 4823931
Alignment:
| Q |
341 |
gtacctaagttttatactcttttaaaagcatgatatgata |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4823892 |
gtacctaagttttatactcttttaaaagcatgaaatgata |
4823931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University