View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21417_low_1 (Length: 564)
Name: NF21417_low_1
Description: NF21417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21417_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Complemental strand, 35685049 - 35684506
Alignment:
| Q |
1 |
actaggtttagaactacggcgctcctcctccgacattggcttaaacttggcagtgtcaacagcattaggtattacaaaaaccttctccggcgccaaaccc |
100 |
Q |
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| T |
35685049 |
actaggtttagaactacggcgctcctcctccgacattggcttaaacttggcagtgtcaacagcattaggtattacaaaaaccttctccggcgccaaaccc |
35684950 |
T |
|
| Q |
101 |
gacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactcacatctgccaaggtaaactgcaaaaccttgttcatgtgtatacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684949 |
gacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactcacatctgccaaggtaaactgcaaaaccttgttcatgtgtatacttc |
35684850 |
T |
|
| Q |
201 |
cagcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatcccatgattctagcatgcataagggcctcatgacaaagtgttgaaaaggt |
300 |
Q |
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| T |
35684849 |
cagcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatcccatgattctagcatgcataagggcctcatgacaaagtgttgaaaaggt |
35684750 |
T |
|
| Q |
301 |
ttgatgtccatgcgcaacggtaattctttctcgagtgagaatagttcttataattgggagtgttccatgcaaagttggaaatgtgttctgattaaagaat |
400 |
Q |
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| T |
35684749 |
ttgatgtccatgcacaacggtaattctttctcgagtgagaatagttcttataattgggagtgttccatgcaaagttggaaatgtgttctgattaaagaat |
35684650 |
T |
|
| Q |
401 |
ggtctccatggaacatagtagatttttaaaccacctgtcatgtatctaaccccagagcgttttccataagcatgagttacaaccaccacctgatcattgg |
500 |
Q |
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| T |
35684649 |
ggtctccatggaacatagtagacttttaaaccacctgtcatgtatctaaccccagagcgttttccataagcatgagttacaaccaccacctgatcattgg |
35684550 |
T |
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| Q |
501 |
tagttacattttaattcaattcaaaaacttcccaaattacctca |
544 |
Q |
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| T |
35684549 |
tagttacattttaattcaattcaaaaacttcccaaattacctca |
35684506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 6e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 283 - 544
Target Start/End: Complemental strand, 20685601 - 20685339
Alignment:
| Q |
283 |
acaaagtgttgaaaaggtttgatgtccatgcgcaacggtaattctttctcgagtgagaatagttcttataattgggagtgttccatgcaaagttggaaat |
382 |
Q |
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| T |
20685601 |
acaaagtgttgaaaaggtttgatgtccatgcacaacggtaattctttctcgagtgaaaatagttcttataattgggagtgttccatataaagttggaaat |
20685502 |
T |
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| Q |
383 |
gtgttctgattaaagaatggtctccatggaacatagtagatttttaaaccacctgtcatgtatctaaccccagagcgttttccataagcatgagttacaa |
482 |
Q |
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|| ||| ||||||||||||||||| |||||||| ||| | ||| |||||| | ||||||| |||||||||||||| ||||||||||||||| ||||||| |
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| T |
20685501 |
gtattcatattaaagaatggtctccgtggaacatggtacactttcaaaccatccgtcatgtgtctaaccccagagcattttccataagcatgggttacaa |
20685402 |
T |
|
| Q |
483 |
ccaccacctgatcattggtagttacattttaa-ttcaattcaaaaacttcccaaattacctca |
544 |
Q |
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| T |
20685401 |
ccaccacctgatcattggtagttacattttaatttcaattcaaaaacattgcaaattacctca |
20685339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 56 - 493
Target Start/End: Original strand, 40672148 - 40672585
Alignment:
| Q |
56 |
tcaacagcattaggtattacaaaaaccttctccggcgccaaacccgacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactca |
155 |
Q |
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||||| |||||||||||||||||||| || || || | |||||| |||| || || ||||| ||||| ||||| |||||||||||||| || ||| ||| |
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| T |
40672148 |
tcaacggcattaggtattacaaaaactttatctggtggcaaacctgaccgtaacactgtgttttccttgcttgtgtgagaaacacatatggcttgagtca |
40672247 |
T |
|
| Q |
156 |
catctgccaaggtaaactgcaaaaccttgttcatgtgtatacttccagcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatcccat |
255 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||| | || |||||||| ||||||||||||||||||||||| |
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| T |
40672248 |
catctgccaaggtaaactgcaacaccttgttcatgtgaatgcttccagcatcagcaaaaccgtacagagaatgatctgtaaacacaaccttgtatcccat |
40672347 |
T |
|
| Q |
256 |
gattctagcatgcataagggcctcatgacaaagtgttgaaaaggtttgatgtccatgcgcaacggtaattctttctcgagtgagaatagttcttataatt |
355 |
Q |
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| |||| |||||||| || | |||||||||| ||| ||||||| ||| ||||||||| | || ||||||||||||||| | ||||| |||||||||||| |
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| T |
40672348 |
ggttcttgcatgcatgagagtttcatgacaaaatgtcgaaaaggcttggtgtccatgcaccactgtaattctttctcgaataagaatcgttcttataatt |
40672447 |
T |
|
| Q |
356 |
gggagtgttccatgcaaagttggaaatgtgttctgattaaagaatggtctccatggaacatagtagatttttaaaccacctgtcatgtatctaaccccag |
455 |
Q |
| |
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|| | | |||| | |||||||| || ||||| ||| ||||||||||||||||||||||| | ||| | |||||| ||||| ||||| ||||||| |
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| T |
40672448 |
ggtaataacccatagatggttggaaacgtattctgcataacaaatggtctccatggaacatagtatactttcagaccaccagtcatatatctgaccccag |
40672547 |
T |
|
| Q |
456 |
agcgttttccataagcatgagttacaaccaccacctga |
493 |
Q |
| |
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| || |||||||||||||||||| |||||||||||||| |
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| T |
40672548 |
atcgatttccataagcatgagttgcaaccaccacctga |
40672585 |
T |
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