View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21417_low_11 (Length: 311)
Name: NF21417_low_11
Description: NF21417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21417_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 8187663 - 8187956
Alignment:
| Q |
1 |
cataatataacatgtaaattatatattccacttagtggtttatttgcctaatttctgatatggtgagttttatatgtcctactaactttagtgtggatat |
100 |
Q |
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| T |
8187663 |
cataatataacatgtaaatcatatattccacttagtggtttatttgcctaatttctgatatggtgagttttatatgtcctactaactttagtgtggatat |
8187762 |
T |
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| Q |
101 |
gcatgtgattttaagagaacaagaggtggtgtttttgattaatattttttgtttcttgttgattctgcttttggtgacttgattcttgattattagagtc |
200 |
Q |
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| T |
8187763 |
gcatgtgattttaagagaacaagaggtggtgtttttgattaatattttttgtttcttgttgattctgcttttggtgacttgattcttgattattagagtc |
8187862 |
T |
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| Q |
201 |
tctcatttatgcta-ttttgttgccattcataaactcattttggaggtttccataatatgtttcattaacttgattgttgaaatttacgacttc |
293 |
Q |
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| T |
8187863 |
tctcatttatgctacttttgttgccattcataaattcattttggaggattccataatatgttccattaacttgattattgaaatttacgacttc |
8187956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 8184502 - 8184557
Alignment:
| Q |
159 |
ttgattctgcttttggtgacttgattcttgattattagagtctctcatttatgcta |
214 |
Q |
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| T |
8184502 |
ttgattctacttttggtgacttgattcttgattatgagagtctctcatttatgcta |
8184557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 516762 - 516844
Alignment:
| Q |
136 |
tgattaatattttttgtttcttgttgattctgcttttggtgacttgattcttgattattagagtctctcatttatgctatttt |
218 |
Q |
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| T |
516762 |
tgattaatctttgttgttgcttgttgattctgcttggggcaacttgattctggattgttgaggtctctcatttatgctatttt |
516844 |
T |
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