View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21417_low_13 (Length: 280)
Name: NF21417_low_13
Description: NF21417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21417_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 6969238 - 6969487
Alignment:
| Q |
14 |
gagatcttcgttacgcacacaaactgtttgatcaaattcctcaaccaaataaattcatgtttaaccatttaataaagggttattctaattccagtgaccc |
113 |
Q |
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| T |
6969238 |
gagatcttcgttacgcacacaaactgtttgatcaaattcctcaaccaaataaattcatgtttaaccatttaataaagggttattctaattccagtgaccc |
6969337 |
T |
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| Q |
114 |
aattaagtctttgttactttaccgtcgaatggtgtgtgatggtattttaccaaaccagtttaccatcccttttgttctcaaagcttgtgctgcgaaatcg |
213 |
Q |
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| T |
6969338 |
aattaagtctttgttactttaccgtcgaatggtgtgtgatggtattttaccaaaccagtttaccatcccttttgttctcaaagcttgtgctgcgaaatcg |
6969437 |
T |
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| Q |
214 |
tgttattggcttggtgtttgtgttcatgctcagtcttttaagcttggaat |
263 |
Q |
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| T |
6969438 |
tgttattggcttggtgtttgtgttcatgctcagtcttttaagcttggaat |
6969487 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 20817836 - 20817804
Alignment:
| Q |
28 |
gcacacaaactgtttgatcaaattcctcaacca |
60 |
Q |
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| T |
20817836 |
gcacacaaactgtttgatcaaattcctcaacca |
20817804 |
T |
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