View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21417_low_15 (Length: 250)
Name: NF21417_low_15
Description: NF21417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21417_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 4746620 - 4746843
Alignment:
| Q |
16 |
aaaatcacaaaatctcccaccaggtgatatgggttggcctttctttggtaacatgcctaccttcgccaaatatgctaaatctgatcctgactcactcatc |
115 |
Q |
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| T |
4746620 |
aaaatcacaaaatctcccaccaggtgatatgggttggcctttctttggtaacatgcctaccttcgccaaatatgctaaatctgatcctgactcactcatc |
4746719 |
T |
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| Q |
116 |
tataaccttatctccaggtattcatccatctatgcttcggttcatctacaaaaccttgaaatataaataaataaaatcttatatttcaatatatgtaata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4746720 |
tataaccttatctccaggtattcatccatctatgcttcggttcatctacaaaaccatgaaatataaataaataaaatcttatatttcaatatatgtaata |
4746819 |
T |
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| Q |
216 |
tttgattttctttgtctctttctt |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
4746820 |
tttgattttctttgtctctttctt |
4746843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 4756226 - 4756289
Alignment:
| Q |
16 |
aaaatcacaaaatctcccaccaggtgatatgggttggcctttctttggtaacatgcctaccttc |
79 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4756226 |
aaaatcacaaaatctcccaccaggtgatatgggttggcctttctttggtaacatgcctaccttc |
4756289 |
T |
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