View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21417_low_16 (Length: 239)
Name: NF21417_low_16
Description: NF21417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21417_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 27637817 - 27637915
Alignment:
| Q |
12 |
atgagatgattttatccatcacagaggccaaccttgaggccagcactttatccaccagcttatacaaagaacctaaatgagagataggatgaaactccc |
110 |
Q |
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| T |
27637817 |
atgagatgattttatccatcacagaggccaaccttgaggccaacactttatccaccagcttatacaaagaacctaaaagagagattggatgaaactccc |
27637915 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 12076991 - 12076920
Alignment:
| Q |
66 |
ccagcttatacaaagaacctaaatgagagataggatgaaactccctaagagattgaggggaatcaactttag |
137 |
Q |
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| T |
12076991 |
ccagcttatacagggaacctagaagagagataggacgaaactcaccaagagattgaggggtataaactttag |
12076920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 30862340 - 30862235
Alignment:
| Q |
17 |
atgattttatccatcacagaggccaaccttgaggccagcactttatccaccagcttatacaaagaacctaaatgagagataggatgaaactccctaagag |
116 |
Q |
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| T |
30862340 |
atgattttatccatcactgaagtgaaccttgaagctaaaactttaacaatcaacttatacagggaacctataagagatataggatgaaactcccaaagag |
30862241 |
T |
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| Q |
117 |
attgag |
122 |
Q |
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| T |
30862240 |
attgag |
30862235 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 5217158 - 5217105
Alignment:
| Q |
81 |
aacctaaatgagagataggatgaaactccctaagagattgaggggaatcaactt |
134 |
Q |
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| T |
5217158 |
aacctagaagagagataggatggaactccccaagagattgaggggagtcaactt |
5217105 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 25058001 - 25058113
Alignment:
| Q |
14 |
gagatgattttatccatcacagaggccaaccttgaggccagcactttatccaccagcttatacaaagaacctaaatgagagataggatgaaactccctaa |
113 |
Q |
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| T |
25058001 |
gagatgattttatccttcactaaggccaaccttaaaaccaacactttaactaccagcttatatagggaatctagaagagagataggacgaaactctcaaa |
25058100 |
T |
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| Q |
114 |
gagattgagggga |
126 |
Q |
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| T |
25058101 |
gaggttgacggga |
25058113 |
T |
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