View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21417_low_2 (Length: 458)
Name: NF21417_low_2
Description: NF21417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21417_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 6968711 - 6969154
Alignment:
| Q |
1 |
aatcacatgtgattatgagagataagagttgtgaaaaactagttacaaatatcatttctctttctctttcgtctcgtgctattcagcattgctattctaa |
100 |
Q |
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|||||||| ||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6968711 |
aatcacatatgagtatgagagac--gagttgtcaaaaactggttacaaatatcatttctctttctctttcgtctcgtactattcagcattgctattctaa |
6968808 |
T |
|
| Q |
101 |
atatatgtaagt--ttatattcaaataccattgacattacatattcacacaggactaaagttcttcgtaaggtaaactaattttgcctgcacttttcatc |
198 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968809 |
atatatgtaagtgtttatattcaaataccattgacattacatattcacacaggactaaagttcttcgtaaggtaaactaattttgcctgcacttttcatc |
6968908 |
T |
|
| Q |
199 |
atcgtcatgttccagtatcaccaatatttagttgttttttaacaatataaacttgaaaccagcacaaaaactgaggtattttttaatgtcctccattttc |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968909 |
atcgtcatgttccagtatcaccaatatttagttgttttttaacaatataaacttgaaaccagcacaaaaactgaggtattttttaatgtcctccattttc |
6969008 |
T |
|
| Q |
299 |
aaactgaaaccagcaaaagctgtttcgttttgcatacacacacaaacacaaatcagtaaaaccattttgcaagagttaaagtccccaactcatcaaaccc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6969009 |
aaactgaaaccagcaaaagctgtttcgttttgcatacacacagaaacacaaatcagtaaaaccattttgcaagagttaaagtccccaactcatcaaaccc |
6969108 |
T |
|
| Q |
399 |
ttcactatctcatagaccaatgcatctccctaaaacaacacaaaca |
444 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6969109 |
ttcactatctcatagaccaatgcatctccctaaaacaactcaaaca |
6969154 |
T |
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