View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21417_low_3 (Length: 444)
Name: NF21417_low_3
Description: NF21417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21417_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 113 - 437
Target Start/End: Complemental strand, 4822248 - 4821924
Alignment:
| Q |
113 |
ctccaaagagtgctccggttactttccgctcaatagctgtgcgtgtttatttataatatagttgacctctataagatcaaaagctttcgatgtgggacta |
212 |
Q |
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| T |
4822248 |
ctccaaagagtgctccagttactatccgctcaatagctgtgcgtgtttatttataatatagttgacctctataagatcaaaagctttcgatgtgggacta |
4822149 |
T |
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| Q |
213 |
ccaattgttccgcaaagcacgcattggtgttggatatgtaggttgtgacttgagattgagatgatgcaannnnnnnggggcatgtaaggcagctgcagct |
312 |
Q |
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| T |
4822148 |
ccaattgttccgcaaagcacgcataggtgttggatatgtaggttgtgacttgagattgagatgatgcaatttttttggggcatgtaaggcagctgctgct |
4822049 |
T |
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| Q |
313 |
tttgaaggtggtcctggcaggggcacaagcagctgccgatggcgggggtcgcgacgatggaagtattggataatacaatggtggtgctgattgcaggctg |
412 |
Q |
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| T |
4822048 |
tttgaaggtggtcctggaaggggcacaagcagctgccgatggcgggggtcgcgacgatggaagtattggataatacaatggtggtgctgattgcaggctg |
4821949 |
T |
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| Q |
413 |
caaagcttctttttcttcttctcac |
437 |
Q |
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| T |
4821948 |
caaagcttcattttcttcttatcac |
4821924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 4823375 - 4823257
Alignment:
| Q |
1 |
ttcttttggataaatcaacttttgagcttatagtgaataa---cttgtaacttgtgagtgaatggaaaattgaaggattggatggtatgagatggaatgg |
97 |
Q |
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| T |
4823375 |
ttcttttggatagatcaaattttgagcttatagtgaataataacttgtaacttgtgagtgaatggaaaattgaaggattagatggtatgaggtggaatgg |
4823276 |
T |
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| Q |
98 |
gttttattgtactacctcc |
116 |
Q |
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| T |
4823275 |
gttttattgtactacctcc |
4823257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 4812010 - 4811942
Alignment:
| Q |
369 |
atggaagtattggataatacaatggtggtgctgattgcaggctgcaaagcttctttttcttcttctcac |
437 |
Q |
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| T |
4812010 |
atggaagtattggataatacaatggtggtgctgattgcaggctgcaaagcttctttttcttcttatcac |
4811942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 4812164 - 4812065
Alignment:
| Q |
113 |
ctccaaagagtgctccggttactttccgctcaatagctgtgcgtgtttatttataatatagttgacctctataaga-tcaaaagctttcgatgtgggact |
211 |
Q |
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| T |
4812164 |
ctccaaagagtgctccagttacaatcctctcaatagttgtgtgcgtttatttataatatagttgacctctacaagattcaaaagcttccaatgtgggact |
4812065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 4813485 - 4813412
Alignment:
| Q |
38 |
taacttgtaacttgtgagtgaatggaaaattgaaggattggatggtatgagatggaatgggttttattgtacta |
111 |
Q |
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| T |
4813485 |
taacttgtaactttggagtggatggaaaattgaaggactggatggtataggatggaatgagttttattgtacta |
4813412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4813551 - 4813502
Alignment:
| Q |
1 |
ttcttttggataaatcaacttttgagcttatagtgaataacttgtaactt |
50 |
Q |
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| T |
4813551 |
ttcttttggatagatcgacatttgagcttatagtgaataacttgtaactt |
4813502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 4800595 - 4800531
Alignment:
| Q |
159 |
ttatttataatatagttgacctctataagat-caaaagctttcgatgtgggactaccaattgttc |
222 |
Q |
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| T |
4800595 |
ttatttataataaagtttacctctataagtttcaaaagctttggatgtgggactatcaattgttc |
4800531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 4815397 - 4815333
Alignment:
| Q |
159 |
ttatttataatatagttgacctctataag-atcaaaagctttcgatgtgggactaccaattgttc |
222 |
Q |
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| T |
4815397 |
ttatttataatttagtttacctctatgagcttcaaaagcttccgatgtggaactaccgattgttc |
4815333 |
T |
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