View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21417_low_4 (Length: 425)
Name: NF21417_low_4
Description: NF21417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21417_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 37 - 375
Target Start/End: Complemental strand, 24499913 - 24499575
Alignment:
| Q |
37 |
taaagaaagcaggacagatggcttattgttgagaggttacgtgagtcaatgagttagggagttgttcatagacacttaacatagaatctacattagccaa |
136 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24499913 |
taaagaaaggtggacagatggcttattgttgagaggttacgtgagtcaatgaggtagggagttgttcatagacatataacatagaatctacattagccaa |
24499814 |
T |
|
| Q |
137 |
gtgtccaatgactacgattttatatttgttgcaaaaatagaacattaagccaatgactacgatttttccatatcaaaacaatataatgaaatgttcgtcg |
236 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24499813 |
gtgtccaatgaatacgattttatatttgttgcaaaaatagaacattaagccaatgactacgatttttccatatcaaaacaata-aatgaaatgttcgtcg |
24499715 |
T |
|
| Q |
237 |
tgacaacaacttcgaaggacggtactaaataactaatataactaataataatatgtttcaaccgtgtaacatgtttacacgatatgatta---ctcataa |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
24499714 |
tgacaacaacttcgaaggacggtactaaataactaatataactaataataatatgtttcaaccgtgtaacatgtttacacgatatgattattgcttataa |
24499615 |
T |
|
| Q |
334 |
tttaatatgctattctttccaaaaaaaatgaatatgttatta |
375 |
Q |
| |
|
||||||||| |||||||| |||||||| || ||||||||| |
|
|
| T |
24499614 |
tttaatatgtcattctttc--aaaaaaattaacatgttatta |
24499575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University