View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21418_high_6 (Length: 322)

Name: NF21418_high_6
Description: NF21418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21418_high_6
NF21418_high_6
[»] chr6 (13 HSPs)
chr6 (1-303)||(13474612-13474919)
chr6 (1-231)||(14020729-14020965)
chr6 (164-303)||(14082746-14082885)
chr6 (98-167)||(13894787-13894856)
chr6 (219-268)||(13898038-13898087)
chr6 (1-70)||(14108634-14108708)
chr6 (98-167)||(13864160-13864229)
chr6 (162-198)||(14023589-14023625)
chr6 (164-198)||(13930562-13930596)
chr6 (126-164)||(13930656-13930694)
chr6 (219-260)||(13894981-13895022)
chr6 (85-165)||(13876802-13876882)
chr6 (107-167)||(13897810-13897870)


Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 13474612 - 13474919
Alignment:
Q  1 agactaataatttaatttaagaaaatatgaaaa-----gtcagaggttcttaatgttatccaactatcttactgaggaggaaaaagaaaatcataaaaac 95  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13474612 agactaataatttaatttaagaaaatatgaaaattgaagtcagaggttcttaatgttatccaactatcttactgaggaggaaaaagaaaatcataaaaac 13474711  T
Q  96 atcctcataacagttcttgcagcagcgcaagatattaattgtcgaaccaagttagcttgcagttgaagtaatgaagaatatcaaaatgtgaaattgttta 195  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13474712 atcctcataacagttctcgcagcagcgcaggatattaattgtcgaaccaagttagcttgcagttgaagtaatgaagaatatcaaaatgtgaaattgttta 13474811  T
Q  196 tgaaaatggttcagtaacatagttttacctcaggaatgacagaaagaacaagaagaatgtcttgaatggagtccgacagattctggtcaggattcaggac 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13474812 tgaaaatggttcagtaacatagttttacctcaggaatgacagaaagaacaagaagaatgtcttgaatggagtcagacagattctggtcaggattcaggac 13474911  T
Q  296 tagccttt 303  Q
    ||||||||    
T  13474912 tagccttt 13474919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 14020965 - 14020729
Alignment:
Q  1 agactaataatttaatttaagaaaatatgaaaa-----gtcagaggttcttaatgttatccaactatcttactgaggaggaaaaagaaaatcataaaaac 95  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| |||||||||||  |||||| ||||||||| ||||||    
T  14020965 agactaataatttaatttaagaaaatatgaaaattgaagtcagaggttcttaatgttatccaattatcttactgaaaaggaaagagaaaatcacaaaaac 14020866  T
Q  96 atcctcataacagttcttgcagcagcgcaagatattaattgtcgaaccaagttagct-tgcagttgaagtaatgaagaatatcaaaatgtgaaattgttt 194  Q
    | |||||||| | |||| | ||||||||| |||||||| |||||||||||||||||| ||||  ||| ||||||||||||| ||||||  || |||||||    
T  14020865 accctcataatatttctcgaagcagcgcaggatattaactgtcgaaccaagttagctgtgcatctgaggtaatgaagaataccaaaataagacattgttt 14020766  T
Q  195 atgaaaatggttcagtaacatagttttacctcaggaa 231  Q
    |||||||| ||||||||||||||  ||||||||||||    
T  14020765 atgaaaattgttcagtaacatagacttacctcaggaa 14020729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 164 - 303
Target Start/End: Complemental strand, 14082885 - 14082746
Alignment:
Q  164 taatgaagaatatcaaaatgtgaaattgtttatgaaaatggttcagtaacatagttttacctcaggaatgacagaaagaacaagaagaatgtcttgaatg 263  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| |||||||||||| ||||    
T  14082885 taataaagaatatcaaaatgtgaaattgtttatgaaaatggttcagtaacatagatttaccacaggaatgagagaaagaacaggaagaatgtcttaaatg 14082786  T
Q  264 gagtccgacagattctggtcaggattcaggactagccttt 303  Q
    ||||   || || ||||||||||||||||||  |||||||    
T  14082785 gagtgaaactgaatctggtcaggattcaggataagccttt 14082746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 13894787 - 13894856
Alignment:
Q  98 cctcataacagttcttgcagcagcgcaagatattaattgtcgaaccaagttagcttgcagttgaagtaat 167  Q
    |||| ||| |||||||||||||||||  |||||||| ||||| |||||||||||||||||||||||||||    
T  13894787 cctcctaatagttcttgcagcagcgctggatattaactgtcggaccaagttagcttgcagttgaagtaat 13894856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 13898038 - 13898087
Alignment:
Q  219 tttacctcaggaatgacagaaagaacaagaagaatgtcttgaatggagtc 268  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13898038 tttacctcaggaatgacagaaagaacaggaagaatgtcttgaatggagtc 13898087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14108708 - 14108634
Alignment:
Q  1 agactaataatttaatttaagaaaatatgaaaa-----gtcagaggttcttaatgttatccaactatcttactga 70  Q
    |||||||||||| ||||||||||||||||||||     |||| |||||||||||||||||||| |||||||||||    
T  14108708 agactaataattcaatttaagaaaatatgaaaatttaagtcataggttcttaatgttatccaattatcttactga 14108634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 13864160 - 13864229
Alignment:
Q  98 cctcataacagttcttgcagcagcgcaagatattaattgtcgaaccaagttagcttgcagttgaagtaat 167  Q
    |||| ||| |||||| ||||||||||  |||||||| ||||| |||||||||||| ||||||||||||||    
T  13864160 cctcctaatagttctcgcagcagcgctggatattaactgtcggaccaagttagctggcagttgaagtaat 13864229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 14023625 - 14023589
Alignment:
Q  162 agtaatgaagaatatcaaaatgtgaaattgtttatga 198  Q
    ||||||||||||| |||||||||||||||||||||||    
T  14023625 agtaatgaagaatttcaaaatgtgaaattgtttatga 14023589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 13930596 - 13930562
Alignment:
Q  164 taatgaagaatatcaaaatgtgaaattgtttatga 198  Q
    ||||||||||| |||||||||||||||||||||||    
T  13930596 taatgaagaatttcaaaatgtgaaattgtttatga 13930562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 13930694 - 13930656
Alignment:
Q  126 gatattaattgtcgaaccaagttagcttgcagttgaagt 164  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  13930694 gatattaactgtcgaaccaagttagcttgctgttgaagt 13930656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 13894981 - 13895022
Alignment:
Q  219 tttacctcaggaatgacagaaagaacaagaagaatgtcttga 260  Q
    ||||||||||||||| ||||||||||  ||||||||||||||    
T  13894981 tttacctcaggaatggcagaaagaacgggaagaatgtcttga 13895022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 13876802 - 13876882
Alignment:
Q  85 atcataaaaacatcctcataacagttcttgcagcagcgcaagatattaattgtcgaaccaagttagcttgcagttgaagta 165  Q
    |||| ||||| | |||| ||| |||||| ||||||||||  ||||||||  |||| ||||||| |||| ||||||||||||    
T  13876802 atcacaaaaataccctcctaatagttctcgcagcagcgctggatattaacagtcggaccaagtaagctggcagttgaagta 13876882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 13897810 - 13897870
Alignment:
Q  107 agttcttgcagcagcgcaagatattaattgtcgaaccaagttagcttgcagttgaagtaat 167  Q
    |||||| |||||||| |  |||||||| ||| |||||||||||||| ||| ||||||||||    
T  13897810 agttctcgcagcagcacgggatattaactgttgaaccaagttagctggcaattgaagtaat 13897870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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