View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21418_high_7 (Length: 305)
Name: NF21418_high_7
Description: NF21418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21418_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 12830788 - 12830939
Alignment:
| Q |
10 |
tgagaagaatgaggggcaagactttgaccattgttggctaatgcatcaaccacgttaaaagtagaaagnnnnnnnnctatgaacataacctaaatttaga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| || ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12830788 |
tgagaagaatgaggggcaagactttgaccattcttggctaatgcatcagccacatttaaagtagaaagaaaataaactatgaacataacctaaatttaga |
12830887 |
T |
|
| Q |
110 |
gacacgcacatcttaactaactatatagaatctcattgaataaattacggtg |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12830888 |
gacacgcacatcttaactaactatatagaatcttattgaataaattacggtg |
12830939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 12831029 - 12831074
Alignment:
| Q |
251 |
tcttcttataatattaaatgtgattaaaaatttgaaaaattcctat |
296 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
12831029 |
tcttcttataatatcaaatgtaattaaaaatttgaaaaattcctat |
12831074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University