View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21418_low_1 (Length: 586)

Name: NF21418_low_1
Description: NF21418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21418_low_1
NF21418_low_1
[»] chr4 (3 HSPs)
chr4 (58-578)||(54058610-54059130)
chr4 (295-354)||(54460006-54460065)
chr4 (277-333)||(54459913-54459969)
[»] chr3 (8 HSPs)
chr3 (64-281)||(15037764-15037978)
chr3 (227-354)||(15038086-15038216)
chr3 (229-354)||(15038310-15038438)
chr3 (222-353)||(15038417-15038551)
chr3 (227-281)||(15038200-15038254)
chr3 (229-281)||(15037980-15038032)
chr3 (229-271)||(15038034-15038076)
chr3 (229-281)||(15038256-15038308)


Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 58 - 578
Target Start/End: Complemental strand, 54059130 - 54058610
Alignment:
Q  58 atgctcttccatcacaacttgtgaggtagtgccaatttgacagagtttacaccataaatctccaaccttaattgtttctgtcaatgcacttttccttcct 157  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54059130 atgctcttccatcacaacttttgaggtagtgccaatttgacagagttcacaccataaacctccaaccttaattgtttctgtcaatgcacttttccttcct 54059031  T
Q  158 acttcctcagtcgcagcaccttttatactctcaaaagaatctacattttcgnnnnnnnccatatgttgttcctcatttttagattctgttactcttttat 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||    
T  54059030 acttcctcagtcgcagcaccttttatactctcaaaagaatctacattttcgtttttctccatatgctgttcctcatttttagattctgttactcttttat 54058931  T
Q  258 caaccatcatttccccgagcttctcgttgttggattctgttatacttacaccattctccgccaccatctccacaagttgctcctcatttttagattcaac 357  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54058930 caaccatcatttcctcgagcttctcgttgttggattctgttacacttacaccattctccgccatcatctccacaagttgctcctcatttttagattcaac 54058831  T
Q  358 gacacttttatcaaccattgtgtcaataagcttctcctcagttttagattctgttacatttaaaccattaccagccatagtctccacatgctgctcctca 457  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54058830 gacacttttatcaatcattgtgtcaataagtttctcctcagttttagattctgttacatttaaaccattaccagccatagtctccacatgctgctcctca 54058731  T
Q  458 gtttttgattctgcattaactccattctcatcaacccttgatattgttgtattaacaactgcatcagtagcatttttcacagttttttcacttttctgtc 557  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54058730 gtttttgattctgcatcaactccattctcatcaacccttgatattgttgtattaacaactgcatcagtagcatttttcacagttttttcacttttctgtc 54058631  T
Q  558 ttgcttctctagccctatgct 578  Q
    |||||||||||||| ||||||    
T  54058630 ttgcttctctagccttatgct 54058610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 54460065 - 54460006
Alignment:
Q  295 tgttatacttacaccattctccgccaccatctccacaagttgctcctcatttttagattc 354  Q
    |||||||||||||||||| || || |||||||| ||||| ||||||||| ||||||||||    
T  54460065 tgttatacttacaccattatcagcaaccatctcaacaagctgctcctcaattttagattc 54460006  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 54459969 - 54459913
Alignment:
Q  277 cttctcgttgttggattctgttatacttacaccattctccgccaccatctccacaag 333  Q
    |||||| || ||||||  |||||||||||||||||| || |||| ||||||||||||    
T  54459969 cttctcatttttggatgttgttatacttacaccattatcagccatcatctccacaag 54459913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 64 - 281
Target Start/End: Original strand, 15037764 - 15037978
Alignment:
Q  64 ttccatcacaacttgtgaggtagtgccaatttgacagagtttacaccataaatctccaaccttaattgtttctgtcaatgcacttttccttcctacttcc 163  Q
    ||||||||||||||||||| | ||||||||||||||||| | |||||||||| ||| | |||||||  |||||||||||||||| |||   ||| |||||    
T  15037764 ttccatcacaacttgtgagttggtgccaatttgacagagctcacaccataaacctctagccttaatcatttctgtcaatgcactcttc---cctgcttcc 15037860  T
Q  164 tcagtcgcagcaccttttatactctcaaaagaatctacattttcgnnnnnnnccatatgttgttcctcatttttagattctgttactcttttatcaacca 263  Q
    ||||| |||||||||||| ||||||||||| |||||||||||| |       ||  |||||| |||||||||||||||||||||||| ||| |||||||     
T  15037861 tcagttgcagcaccttttttactctcaaaaaaatctacattttggtttttctccgcatgttgctcctcatttttagattctgttactttttcatcaaccg 15037960  T
Q  264 tcatttccccgagcttct 281  Q
    |||||||| |||||||||    
T  15037961 tcatttcctcgagcttct 15037978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 227 - 354
Target Start/End: Original strand, 15038086 - 15038216
Alignment:
Q  227 tcctcatttttagattctgttactcttttatcaaccatcatttccccgagcttct---cgttgttggattctgttatacttacaccattctccgccacca 323  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| |||||||||   | |  ||||||||||||| |||||||||||| |||  ||||     
T  15038086 tcctcatttttagattctgttactctttcatcaaccgtcatttcctcgagcttcttctcatctttggattctgttacacttacaccattatccaacaccg 15038185  T
Q  324 tctccacaagttgctcctcatttttagattc 354  Q
    |||||| ||||| ||||||| ||||||||||    
T  15038186 tctccaaaagtttctcctcaattttagattc 15038216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 229 - 354
Target Start/End: Original strand, 15038310 - 15038438
Alignment:
Q  229 ctcatttttagattctgttactcttttatcaaccatcatttccccgagcttct---cgttgttggattctgttatacttacaccattctccgccaccatc 325  Q
    |||||||||||||||||||||| ||| ||||||| |||||||| |||||||||   | || || |||||||||| |||||||||||| |||  |||| ||    
T  15038310 ctcatttttagattctgttactgtttcatcaaccgtcatttcctcgagcttcttctcatttttagattctgttaaacttacaccattatccaacaccgtc 15038409  T
Q  326 tccacaagttgctcctcatttttagattc 354  Q
    |||| |||||||||||||| |||||||||    
T  15038410 tccaaaagttgctcctcatatttagattc 15038438  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 222 - 353
Target Start/End: Original strand, 15038417 - 15038551
Alignment:
Q  222 gttgttcctcatttttagattctgttactcttttatcaaccatcatttccccgag---cttctcgttgttggattctgttatacttacaccattctccgc 318  Q
    |||| ||||||| |||||||||||||||||||| ||||||| |||||||| ||||   |||||| || || ||||||| || |||| ||||||| ||| |    
T  15038417 gttgctcctcatatttagattctgttactctttcatcaaccgtcatttcctcgagctccttctcatttttagattctgctacactttcaccattatccac 15038516  T
Q  319 caccatctccacaagttgctcctcatttttagatt 353  Q
    ||   |||||| |||||||||||||||||| ||||    
T  15038517 cattgtctccaaaagttgctcctcattttttgatt 15038551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 15038200 - 15038254
Alignment:
Q  227 tcctcatttttagattctgttactcttttatcaaccatcatttccccgagcttct 281  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  15038200 tcctcaattttagattctgttactgtttcatcaaccatcatttcctcgagcttct 15038254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 15037980 - 15038032
Alignment:
Q  229 ctcatttttagattctgttactcttttatcaaccatcatttccccgagcttct 281  Q
    ||||||||| |||||||||||||||| ||||||| |||||||| |||||||||    
T  15037980 ctcatttttggattctgttactctttcatcaaccgtcatttcctcgagcttct 15038032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 15038034 - 15038076
Alignment:
Q  229 ctcatttttagattctgttactcttttatcaaccatcatttcc 271  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||    
T  15038034 ctcatctttagattctgttactctttcatcaaccgtcatttcc 15038076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 15038256 - 15038308
Alignment:
Q  229 ctcatttttagattctgttactcttttatcaaccatcatttccccgagcttct 281  Q
    ||||||||||||||||||||| |||  ||||||  |||||||| |||||||||    
T  15038256 ctcatttttagattctgttacacttacatcaactgtcatttcctcgagcttct 15038308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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