View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21418_low_2 (Length: 475)

Name: NF21418_low_2
Description: NF21418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21418_low_2
NF21418_low_2
[»] chr5 (8 HSPs)
chr5 (9-458)||(40181230-40181680)
chr5 (209-458)||(38605714-38605960)
chr5 (338-426)||(40180547-40180635)
chr5 (281-417)||(41885856-41885992)
chr5 (13-74)||(40180938-40180999)
chr5 (358-458)||(38605020-38605120)
chr5 (32-101)||(38606068-38606137)
chr5 (44-101)||(41885617-41885674)
[»] chr1 (1 HSPs)
chr1 (13-433)||(46358821-46359239)
[»] chr8 (10 HSPs)
chr8 (9-193)||(44459246-44459430)
chr8 (9-193)||(44466779-44466963)
chr8 (306-433)||(44459540-44459667)
chr8 (306-433)||(44467073-44467200)
chr8 (214-433)||(44460150-44460369)
chr8 (214-433)||(44467683-44467902)
chr8 (32-101)||(34502619-34502688)
chr8 (358-433)||(34502307-34502382)
chr8 (32-114)||(44459962-44460044)
chr8 (32-114)||(44467495-44467577)
[»] chr6 (1 HSPs)
chr6 (349-404)||(410919-410974)


Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 458
Target Start/End: Complemental strand, 40181680 - 40181230
Alignment:
Q  9 acatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttc 108  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40181680 acatcatcaacaacactttctaatcagtgttattgaaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaatcttatatacttc 40181581  T
Q  109 ataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttcactatgattttaatg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  40181580 ataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactactgttcactatgatttcaatg 40181481  T
Q  209 ttaaactaaggaagaaatacatatt-ttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaac 307  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  40181480 ttaaactaaggaagaaatacatatttttttctgtgggacatgcttaagtatattggccgctatgaaactgactttcttaatgcaaggattctcaataaac 40181381  T
Q  308 tcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatactta 407  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40181380 tcatagaatccttctcagttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacata 40181281  T
Q  408 ttactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatat 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181280 ttactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatat 40181230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 209 - 458
Target Start/End: Complemental strand, 38605960 - 38605714
Alignment:
Q  209 ttaaactaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaact 308  Q
    ||||||||||||||||  ||||| |||||||||||||  |||||||||| |||||||  ||| |||| | | |||||||| ||   ||||| ||| | ||    
T  38605960 ttaaactaaggaagaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaaccggccttcttaacccacccattctcaatcacct 38605861  T
Q  309 catagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttat 408  Q
    |||| ||| ||||||  |||| || |   |||| ||| | |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| || |||    
T  38605860 catacaattcttctcaattataggtcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatat 38605761  T
Q  409 tactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatat 458  Q
    |||| |||||| |||||||||||   || ||||| |||||||||||||||    
T  38605760 tactttacacttcaagctctttt---gaccacaacgtgtagtgctgatat 38605714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 426
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  338 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagct 426  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||  || |||||||||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 417
Target Start/End: Original strand, 41885856 - 41885992
Alignment:
Q  281 ttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatt 380  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||  |||||||||   |||| || || ||||  |||||||||||||| ||||| |  ||    
T  41885856 ttcttaacgctcggattctaaataaactaatagaattcttctcaattatggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttt 41885955  T
Q  381 tcaatgtgtgccaaatcaagatacttattactataca 417  Q
    |||||||| ||||||||||||||| ||||||| ||||    
T  41885956 tcaatgtgagccaaatcaagatacatattactttaca 41885992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 40180999 - 40180938
Alignment:
Q  13 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaac 74  Q
    ||||||||| | ||| || ||||||||||| |||||||||||||||||||||| | ||||||    
T  40180999 catcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaac 40180938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 458
Target Start/End: Complemental strand, 38605120 - 38605020
Alignment:
Q  358 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 457  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| | |||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  38605120 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 38605021  T
Q  458 t 458  Q
    |    
T  38605020 t 38605020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 38606137 - 38606068
Alignment:
Q  32 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 101  Q
    ||||||||||| |||||||||||||||| ||||||| | |||||| ||| ||  ||||||| || |||||    
T  38606137 tcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat 38606068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 41885617 - 41885674
Alignment:
Q  44 aaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 101  Q
    ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| ||||    
T  41885617 aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataattttat 41885674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 433
Target Start/End: Original strand, 46358821 - 46359239
Alignment:
Q  13 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataa 112  Q
    ||||||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||| ||||    
T  46358821 catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa 46358920  T
Q  113 agatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttcactatgattttaatgttaa 212  Q
    || || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  |  |||| |  | |||| |  |  ||||  |||| || |    
T  46358921 agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcagaaatatg--ccgctggttccactgatgataatattca 46359018  T
Q  213 actaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcata 312  Q
     |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||    
T  46359019 tctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactccta 46359118  T
Q  313 gaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattact 412  Q
     | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  |     
T  46359119 cactcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcc 46359218  T
Q  413 atacactgcaagctcttttga 433  Q
    |||| ||||||||| ||||||    
T  46359219 atacgctgcaagcttttttga 46359239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 44459246 - 44459430
Alignment:
Q  9 acatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttc 108  Q
    |||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  ||||     
T  44459246 acatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaacttt 44459345  T
Q  109 ataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 193  Q
    |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44459346 ataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44459430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 44466779 - 44466963
Alignment:
Q  9 acatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttc 108  Q
    |||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  ||||     
T  44466779 acatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaacttt 44466878  T
Q  109 ataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 193  Q
    |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44466879 ataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44466963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 433
Target Start/End: Original strand, 44459540 - 44459667
Alignment:
Q  306 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 405  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44459540 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44459639  T
Q  406 tattactatacactgcaagctcttttga 433  Q
    ||||||| ||| ||||||||||||||||    
T  44459640 tattactttactctgcaagctcttttga 44459667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 433
Target Start/End: Original strand, 44467073 - 44467200
Alignment:
Q  306 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 405  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44467073 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44467172  T
Q  406 tattactatacactgcaagctcttttga 433  Q
    ||||||| ||| ||||||||||||||||    
T  44467173 tattactttactctgcaagctcttttga 44467200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 433
Target Start/End: Original strand, 44460150 - 44460369
Alignment:
Q  214 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 313  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  44460150 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44460249  T
Q  314 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 413  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44460250 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44460349  T
Q  414 tacactgcaagctcttttga 433  Q
    ||| ||||||||| ||||||    
T  44460350 tacgctgcaagcttttttga 44460369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 433
Target Start/End: Original strand, 44467683 - 44467902
Alignment:
Q  214 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 313  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  44467683 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44467782  T
Q  314 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 413  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44467783 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44467882  T
Q  414 tacactgcaagctcttttga 433  Q
    ||| ||||||||| ||||||    
T  44467883 tacgctgcaagcttttttga 44467902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 34502688 - 34502619
Alignment:
Q  32 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 101  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| ||||||||    
T  34502688 tcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttat 34502619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 433
Target Start/End: Complemental strand, 34502382 - 34502307
Alignment:
Q  358 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttga 433  Q
    ||||||||||| ||||| | ||||||||||||||| |||| |||||| ||   || ||||||| ||||||||||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctcttttga 34502307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 44459962 - 44460044
Alignment:
Q  32 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 114  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44459962 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44460044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 44467495 - 44467577
Alignment:
Q  32 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 114  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44467495 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44467577  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 404
Target Start/End: Original strand, 410919 - 410974
Alignment:
Q  349 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatac 404  Q
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T  410919 gcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatac 410974  T

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