View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21418_low_3 (Length: 412)
Name: NF21418_low_3
Description: NF21418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21418_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 191 - 412
Target Start/End: Original strand, 53574735 - 53574956
Alignment:
| Q |
191 |
catagatttcgatatactcctcaatttctactacttcatcgaattgtttatgatcttaaagctttaaacaccacgttcctctatccaatatctttatact |
290 |
Q |
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| T |
53574735 |
catagatttcgatatactcctcaatttctactacttcatcgaattgtttatgatcttaaagctttaaacaccacgttcctctatccaatatctttatact |
53574834 |
T |
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| Q |
291 |
aattaagctacacatgattccacgcttaaaactatgacctaattctccaattccacatttttcttttctaaatcaactcaaccttaaaacgaaccgacga |
390 |
Q |
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| T |
53574835 |
aattaagctacacatgattccacccttaaaactatgacctaattctccaattccacatttttcttttctaaatcaactcaaccttaaaacgaaccgacga |
53574934 |
T |
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| Q |
391 |
aaagaaactattaatatgaaca |
412 |
Q |
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| T |
53574935 |
aaagaaactattaatatgaaca |
53574956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 53574607 - 53574671
Alignment:
| Q |
55 |
caacaaaatttctcatttagtttcatcttccacttcatcaccgttctcttcacattcatgacttt |
119 |
Q |
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| T |
53574607 |
caacacaatttctcatttagtttcatcttcctcttcgtcaccgttctcttcacattcatgacttt |
53574671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 26160746 - 26160710
Alignment:
| Q |
277 |
aatatctttatactaattaagctacacatgattccac |
313 |
Q |
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| T |
26160746 |
aatatctttctactaattaagctacacatgattccac |
26160710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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