View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21418_low_4 (Length: 396)
Name: NF21418_low_4
Description: NF21418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21418_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 41939086 - 41939473
Alignment:
| Q |
1 |
tcatcagtactactcattctcttgtgagagtgcctcttgcagcagcagcttagatgatgaagattccatcttcctctctcttgctcctcctggccaccaa |
100 |
Q |
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| T |
41939086 |
tcatcagtactactcattctcttgtgagagtgcctcttgcagcagcagcttagatgatgaagattccatcttcctctctcttgctcctcctggccaccaa |
41939185 |
T |
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| Q |
101 |
atacctcccaaactcacaccccctcatcccactattagtactactatccctcccttacatcaaatacctatttctactactacctctctccaccatcacc |
200 |
Q |
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| T |
41939186 |
atacctcccaaactcacaccccctcatcccactattagtactactatccctcccttgcatcaaatacctatttctactactacctctctccaccatcacc |
41939285 |
T |
|
| Q |
201 |
atacttgtgctgtaaatgtagcacttaatgccctaattaatccaactttcacttcaaaaccatctcacactcccattattcctcaatattggatcccttc |
300 |
Q |
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| T |
41939286 |
atacttgtgctgtaaatgtagcacttaatgccctaattaatccaactttcacttcaaaaccatctcacactcccattattcctcaatattggatcccttc |
41939385 |
T |
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| Q |
301 |
tcctgctcaaatccttgttggtcctacacagttttcttgcactgtttgcaataaaaccttcaaccgtttcaacaacatgcaggttcat |
388 |
Q |
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| T |
41939386 |
tcctgctcaaatccttgttggtcctacccagttttcttgcactgtttgcaacaaaaccttcaaccgtttcaacaacatgcaggttcat |
41939473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 385
Target Start/End: Complemental strand, 21038455 - 21038357
Alignment:
| Q |
287 |
tattggatcccttctcctgctcaaatccttgttggtcctacacagttttcttgcactgtttgcaataaaaccttcaaccgtttcaacaacatgcaggtt |
385 |
Q |
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| T |
21038455 |
tattggatccctactccttctcagattcttattggtcctacacaattctcttgtcctgtttgctgcaaaaccttcaacagatacaacaacatgcaggtt |
21038357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 283 - 385
Target Start/End: Complemental strand, 22296715 - 22296613
Alignment:
| Q |
283 |
tcaatattggatcccttctcctgctcaaatccttgttggtcctacacagttttcttgcactgtttgcaataaaaccttcaaccgtttcaacaacatgcag |
382 |
Q |
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|||||||||||| ||||| |||||||||||||| |||| || |||||||| |||||||| || |||||||||| |||||||||||||| || |||||| |
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| T |
22296715 |
tcaatattggattccttcacctgctcaaatcctcattggaccaacacagttctcttgcacagtgtgcaataaaatgttcaaccgtttcaataatatgcag |
22296616 |
T |
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| Q |
383 |
gtt |
385 |
Q |
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||| |
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| T |
22296615 |
gtt |
22296613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 36568470 - 36568535
Alignment:
| Q |
284 |
caatattggatcccttctcctgctcaaatccttgttggtcctacacagttttcttgcactgtttgc |
349 |
Q |
| |
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||||||||||||||| ||||| ||||||| || ||||||| || ||||| |||||| |||||||| |
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| T |
36568470 |
caatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgc |
36568535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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