View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21419_high_2 (Length: 348)

Name: NF21419_high_2
Description: NF21419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21419_high_2
NF21419_high_2
[»] chr1 (1 HSPs)
chr1 (9-345)||(24975694-24976029)
[»] chr5 (4 HSPs)
chr5 (16-345)||(23490410-23490734)
chr5 (107-345)||(13537623-13537860)
chr5 (218-345)||(42790481-42790608)
chr5 (70-147)||(42790657-42790733)
[»] scaffold0096 (1 HSPs)
scaffold0096 (16-345)||(24338-24666)
[»] chr6 (3 HSPs)
chr6 (9-345)||(27963588-27963923)
chr6 (67-345)||(18733957-18734234)
chr6 (48-224)||(19861957-19862132)
[»] chr4 (5 HSPs)
chr4 (16-320)||(18278375-18278678)
chr4 (183-345)||(3844146-3844307)
chr4 (120-345)||(15311016-15311241)
chr4 (180-311)||(10268088-10268219)
chr4 (69-116)||(10268273-10268320)
[»] scaffold0008 (1 HSPs)
scaffold0008 (13-339)||(251332-251657)
[»] scaffold0034 (1 HSPs)
scaffold0034 (43-345)||(26662-26963)
[»] chr2 (2 HSPs)
chr2 (13-291)||(23927793-23928071)
chr2 (254-348)||(27345491-27345585)
[»] scaffold0433 (1 HSPs)
scaffold0433 (183-345)||(10853-11014)
[»] scaffold0192 (1 HSPs)
scaffold0192 (91-345)||(8027-8286)
[»] scaffold0002 (1 HSPs)
scaffold0002 (42-345)||(386543-386845)
[»] scaffold0063 (1 HSPs)
scaffold0063 (67-249)||(39524-39705)
[»] chr8 (2 HSPs)
chr8 (158-251)||(24039908-24040001)
chr8 (305-345)||(16093051-16093091)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 345
Target Start/End: Original strand, 24975694 - 24976029
Alignment:
Q  9 agcagagagaaagaccgtcgaactcatcattgacggctacgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtg 108  Q
    |||||| ||||| |||||||| || ||| |||| ||||  ||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||||    
T  24975694 agcagaaagaaaaaccgtcgagcttatcgttgatggctcagagcctggtaagacagttgccatgtccatagaacatctcggtgacttccctgacaacgtg 24975793  T
Q  109 gaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaag 208  Q
    |||||||||||  || |||||||||||||||||||||||||  |||||||| ||| ||||||||| | ||||| |||||||||  |||||||||||||||    
T  24975794 gaaatcacccct-tattcatgcacctgggagcagttcccctccgccaacgttatcacgggaggaacactgaacgtctccatggagagcatgaagagaaag 24975892  T
Q  209 ttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaa 308  Q
    |||||||||||||||||||| |||||| | | |||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24975893 ttcgaggaactcatgagtgtaaacttgctagccccctccaaccacggaggaaggccacctttggcgttctatgattcagaacttcctggtggagcttcaa 24975992  T
Q  309 attcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    |||||||||||||||||||||||||||||||||||||    
T  24975993 attcagccattcctttgctcgtgcgagcatcgatggc 24976029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 23490734 - 23490410
Alignment:
Q  16 agaaagaccgtcgaactcatcattgacggctacgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatca 115  Q
    |||||||||||||| |||||| | |||| || |||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23490734 agaaagaccgtcgagctcatcgtggacgactccgagcctgttaagatagttgccatgtctgtggaacatctcggtgatttccctgacaacgtggaaatca 23490635  T
Q  116 cccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgagg 215  Q
     |||  ||||||||||||||||||||||||||||  |||||||| ||| | ||||||| | | ||| |||||||||| ||||||||||||||||||||||    
T  23490634 -cccgttactcatgcacctgggagcagttcccctccgccaacgttatcacaggaggaacactaaacgtctccatggggagcatgaagagaaagttcgagg 23490536  T
Q  216 aactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagc 315  Q
    |||||||||||||    ||| | | || ||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23490535 aactcatgagtgt----ttgctagccctctcgaaccacggaggaaggccacctttggcattctatgattcagaacttcttggtggagcttcaaattcagc 23490440  T
Q  316 cattcctttgctcgtgcgagcatcgatggc 345  Q
    ||||||||||||||||||||||||||||||    
T  23490439 cattcctttgctcgtgcgagcatcgatggc 23490410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 107 - 345
Target Start/End: Complemental strand, 13537860 - 13537623
Alignment:
Q  107 tggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaa 206  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||  ||||||||||||||||||||||||    
T  13537860 tggaaatcacccct-tactcatgcacctgggagcagttcccctctgccaacgtcatcacgggaggaacactgaatgtctccatgggaagcatgaagagaa 13537762  T
Q  207 agttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttc 306  Q
    |||| |||||||||||||||||||||||| |||  ||||||||||   ||||||| |||||||||||||||||||||||| ||||||||||||||| |||    
T  13537761 agtttgaggaactcatgagtgtcaacttgctggctccctccaaccacagaggaagaccacctttggcattctatgattcaaaacttcctggtggagtttc 13537662  T
Q  307 aaattcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  13537661 aaattcagtcattcctttgctcgtgcgagcatcaatggc 13537623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 42790608 - 42790481
Alignment:
Q  218 ctcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagcca 317  Q
    |||||||| ||||||||| ||| ||| |||||||| ||||| || ||||| ||||| ||||| || ||||||||||| |||||| |||||||| ||||||    
T  42790608 ctcatgagcgtcaacttgctggccccttccaacctcggagggagaccacccttggcgttctacgactcagaacttcccggtggatcttcaaatgcagcca 42790509  T
Q  318 ttcctttgctcgtgcgagcatcgatggc 345  Q
    |||| ||| ||||  ||||||| |||||    
T  42790508 ttccattgttcgtatgagcatcaatggc 42790481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 42790733 - 42790657
Alignment:
Q  70 atgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttccc 147  Q
    |||||||||||||| || |||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||||    
T  42790733 atgtccgtggaacagctgggtgatttccctgacaacgtgggaatca-ccccctactcatgcacttgggaacagttccc 42790657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 24338 - 24666
Alignment:
Q  16 agaaagaccgtcgaactcatcattgacggctacgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatca 115  Q
    |||||||||||||| ||||||||||| ||||  ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  24338 agaaagaccgtcgagctcatcattgatggctctgagtctggtaagacagttgccatgtccgtggaacatctcggtgatttgcctgagaacgtggaaatca 24437  T
Q  116 cccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgagg 215  Q
    |||   ||||||||||| ||| ||||||||||||  |||||  | ||| ||||||||| | ||||| |||||||||| ||||||||||| ||||||||||    
T  24438 ccctt-tactcatgcacgtggcagcagttcccctccgccaattttatcacgggaggaacactgaacgtctccatggggagcatgaagaggaagttcgagg 24536  T
Q  216 aactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagc 315  Q
    |||||||||||||||||||| | | ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||    
T  24537 aactcatgagtgtcaacttgctagccccctccaatcacggaggaaggccacctttggcattctatgattcagaacttcctggcggagcttcaaactaagc 24636  T
Q  316 cattcctttgctcgtgcgagcatcgatggc 345  Q
    ||||||||| || || | ||||||||||||    
T  24637 cattccttttctagtacaagcatcgatggc 24666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 9 - 345
Target Start/End: Complemental strand, 27963923 - 27963588
Alignment:
Q  9 agcagagagaaagaccgtcgaactcatcattgacggctacgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtg 108  Q
    |||||| |||||||||||||| ||| || | ||||||| |||||||||||||  |||| ||||||||||| ||||||||||||||||||| |||||| ||    
T  27963923 agcagaaagaaagaccgtcgagctcgtcgtagacggctccgagcctggtaaggcagtttccatgtccgtgaaacatctcggtgatttcccggacaacttg 27963824  T
Q  109 gaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaag 208  Q
    |||| ||||||  ||||||||||| ||||| ||||| ||||  |||||||| ||| |||||||||   | ||| |||||||||| ||||||||||||||     
T  27963823 gaaaccacccct-tactcatgcacgtgggaacagtttccctccgccaacgttatcacgggaggaacgctaaacgtctccatggggagcatgaagagaaat 27963725  T
Q  209 ttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaa 308  Q
    || || ||||||||||||||||||||| | | |||||||||||  |||||||||||||||||||| ||||||||||||||||||||| || |||||||||    
T  27963724 tttgaagaactcatgagtgtcaacttgctagccccctccaaccacggaggaaggccacctttggcgttctatgattcagaacttccttgtagagcttcaa 27963625  T
Q  309 attcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    |||||||||||||||||||||| ||||||||||||||    
T  27963624 attcagccattcctttgctcgtacgagcatcgatggc 27963588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 67 - 345
Target Start/End: Complemental strand, 18734234 - 18733957
Alignment:
Q  67 gccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccg 166  Q
    ||||||||||| |||||||| |||||||||| ||| ||| |||||||||||||| ||||||| ||||| ||||||||| |||| ||||||||||||| ||    
T  18734234 gccatgtccgttgaacatctgggtgatttccttgataacttggaaatcaccccc-tactcattcacctaggagcagtttccctctgccaacgtcatcacg 18734136  T
Q  167 ggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccac 266  Q
    |||||||   | ||||||||||||||||||||||||||||||||||| |||||||  |||||||||||| |||  |||||||||||    || |  ||||    
T  18734135 ggaggaacggtcaacatctccatgggaagcatgaagagaaagttcgaagaactcaaaagtgtcaacttgctggaaccctccaacctcaagggtaaaccac 18734036  T
Q  267 ctttggcattctatgattcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    || |||| |||||  |||||||||| || |||||||| |||||||||| |||||| |||||||| |||||||| |||||    
T  18734035 ctctggcgttctacaattcagaactaccaggtggagcctcaaattcagtcattccgttgctcgtacgagcatcaatggc 18733957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 19861957 - 19862132
Alignment:
Q  48 cgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttccc 147  Q
    ||||||| | |||| |||| |||| ||||| |||||||| |||||||||| | |  |  | ||||||||||| ||||||| |||||||||||||||||||    
T  19861957 cgagcctcgcaagacagtttccatatccgttgaacatctgggtgatttccttcaagatatagaaatcacccc-ctactcaagcacctgggagcagttccc 19862055  T
Q  148 ctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatga 224  Q
    ||  ||||||| |||| |  ||||||   |  ||||||||||||||| ||||||||| || ||||| || |||||||    
T  19862056 ctccgccaacggcatcacaagaggaacgctagacatctccatgggaaacatgaagaggaaattcgaagagctcatga 19862132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 18278375 - 18278678
Alignment:
Q  16 agaaagaccgtcgaactcatcattgacggctacgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatca 115  Q
    |||||||||||||| |||||| |||||||||  ||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||||||    
T  18278375 agaaagaccgtcgagctcatcgttgacggctctgagcctggtaagacagtcgccaagtccgtggaacatctcggtgatttccctgacaacgtcgaaatca 18278474  T
Q  116 cccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgagg 215  Q
    |||   ||||||||||||||||| || |||||||  |||||||||||| ||||||||| |  |||| |||||||||  |||||||||||||||||| |||    
T  18278475 cccgt-tactcatgcacctgggaacatttcccctccgccaacgtcatcacgggaggaacaccgaacgtctccatggacagcatgaagagaaagttcaagg 18278573  T
Q  216 aactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagc 315  Q
    | ||||||||| |||||||| | | |||||| | ||  ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |    
T  18278574 atctcatgagtatcaacttgctagccccctctacccacggaggaaggccacctttggcattctatgattcagaacttcccgatggagcttcaaatttacc 18278673  T
Q  316 cattc 320  Q
    |||||    
T  18278674 cattc 18278678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 3844307 - 3844146
Alignment:
Q  183 tctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatga 282  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  || |||||||   |||||||||||| ||||| |||||||||    
T  3844307 tctccatgagaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgctggctccttccaaccacagaggaaggccacgtttggaattctatga 3844208  T
Q  283 ttcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  3844207 ttcggaacttcctggtggagcttcaaattcagccattcctttactcgtgcga-catcgatggc 3844146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 120 - 345
Target Start/End: Complemental strand, 15311241 - 15311016
Alignment:
Q  120 cctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaact 219  Q
    |||| |||||||| ||||| || |||||||  |||||||||||| | ||||||||| || ||||||||||||||| ||||||||  || ||| |  | ||    
T  15311241 cctagtcatgcacatgggaacaattcccctccgccaacgtcatcacaggaggaatactggacatctccatgggaatcatgaagaagaaattcaaaaagct 15311142  T
Q  220 catgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagccatt 319  Q
    |||||| ||||||||| ||| ||||||||||  ||||||||| ||||||||||| ||||| || |  ||||| || ||||||||||||||||  ||||||    
T  15311141 catgagcgtcaacttgctggccccctccaacaatggaggaagaccacctttggcgttctacgactacgaactgcccggtggagcttcaaattttgccatt 15311042  T
Q  320 cctttgctcgtgcgagcatcgatggc 345  Q
    ||||||||||||||||||||||||||    
T  15311041 cctttgctcgtgcgagcatcgatggc 15311016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 311
Target Start/End: Complemental strand, 10268219 - 10268088
Alignment:
Q  180 acatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattcta 279  Q
    |||| |||||||||||||||||||| || ||||| || |||||||| ||||||||| ||||||||||||||| | ||||||| |||| |||||| |||||    
T  10268219 acatttccatgggaagcatgaagaggaaattcgaagagctcatgagcgtcaacttgctggtcccctccaaccatagaggaagaccacttttggcgttcta 10268120  T
Q  280 tgattcagaacttcctggtggagcttcaaatt 311  Q
     || |  ||||| || |||||||| |||||||    
T  10268119 cgactacgaactgcccggtggagcctcaaatt 10268088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 10268320 - 10268273
Alignment:
Q  69 catgtccgtggaacatctcggtgatttccctgacaacgtggaaatcac 116  Q
    |||||||||||||||||| ||||||||||| |||||| | ||||||||    
T  10268320 catgtccgtggaacatctgggtgatttccccgacaacatagaaatcac 10268273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 251657 - 251332
Alignment:
Q  13 gagagaaagaccgtcgaactcatcattgacggctacgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaa 112  Q
    |||||||| |||||||||||||||| | | ||  ||||  | |  |||| ||| |||||||||||||||||||| ||  ||||||||||||| |||||||    
T  251657 gagagaaaaaccgtcgaactcatcacttatggtaacgaagcggacaagatagtcgccatgtccgtggaacatctgggcaatttccctgacaatgtggaaa 251558  T
Q  113 tcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcg 212  Q
    |||||||| ||||||||||||||||| ||||| ||||  |||||||||||| |||| ||||   ||||||||| ||||||||||||||||||||||||||    
T  251557 tcaccccc-tactcatgcacctgggaacagtttccctccgccaacgtcatcacgggcggaacgctgaacatcttcatgggaagcatgaagagaaagttcg 251459  T
Q  213 aggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattc 312  Q
    | || || ||||| || ||| || ||| ||||||||||  ||||||||| | |||| |||||||||| || |||||||| ||  ||||||| ||||||||    
T  251458 aagagctaatgagcgtgaacctgctggccccctccaacaatggaggaagactacctatggcattctacgactcagaactacccagtggagcctcaaattc 251359  T
Q  313 agccattcctttgctcgtgcgagcatc 339  Q
    |||||||||||||||||||||||||||    
T  251358 agccattcctttgctcgtgcgagcatc 251332  T

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Target: scaffold0034 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 43 - 345
Target Start/End: Original strand, 26662 - 26963
Alignment:
Q  43 ggctacgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcag 142  Q
    |||| ||||||||| |||| |||||||||||| |||||||| || ||||||||||||||  |  | |||||||||| | |||||||||| || || ||||    
T  26662 ggctccgagcctggcaagacagttgccatgtctgtggaacaactgggtgatttccctgaagatatagaaatcacccgc-tactcatgcagctaggtgcag 26760  T
Q  143 ttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcc 242  Q
    ||||||| |||||||||||||   |||||||   || ||||||||||||||||||||||||| || ||||| || |||||||| ||||||||| | ||||    
T  26761 ttcccctctgccaacgtcatcataggaggaacgctggacatctccatgggaagcatgaagaggaaattcgaagagctcatgagcgtcaacttgctagtcc 26860  T
Q  243 cctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgat 342  Q
    |||||||||  |||||||| |||||||| || ||||| || || ||||| |||||||||||||||||||  |||||||||||||||| || |||||||||    
T  26861 cctccaaccacggaggaagaccacctttcgcgttctacgactccgaactacctggtggagcttcaaattatgccattcctttgctcgcgcaagcatcgat 26960  T
Q  343 ggc 345  Q
    |||    
T  26961 ggc 26963  T

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Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 23928071 - 23927793
Alignment:
Q  13 gagagaaagaccgtcgaactcatcattgacggctacgagcctggtaagaaa--gttgccatgtccgtggaacatctcggtgatttccctgacaacgtgga 110  Q
    ||||||||||||||||||||||||    | ||| ||||  |||| |||| |  || |||||||  ||||||||||| || ||||||||||||||||||||    
T  23928071 gagagaaagaccgtcgaactcatcggcaatggcaacgaagctggcaagatatagtcgccatgtttgtggaacatctgggcgatttccctgacaacgtgga 23927972  T
Q  111 aatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagtt 210  Q
    |||||||||  ||| ||||||||||||| ||||| ||||  |||||||||||| |||||||||   ||||||||| ||||||||||||||||||||| ||    
T  23927971 aatcacccc--tacacatgcacctgggaacagtttccctccgccaacgtcatcacgggaggaacgctgaacatctgcatgggaagcatgaagagaaaatt 23927874  T
Q  211 cgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatgattcagaact 291  Q
    ||| || ||||||||||||||| || ||| ||||||||||| ||||||||| | ||||||||| ||||| || ||||||||    
T  23927873 cgaagagctcatgagtgtcaacctgctggccccctccaaccgtggaggaagactacctttggcgttctacgactcagaact 23927793  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 27345585 - 27345491
Alignment:
Q  254 ggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgatggcaaa 348  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  27345585 ggaggaaggccacctttggcattctatgattcagaacttcccggtggggcttcaaattcagccattcctttgctcgtgcaagcatcgatggcaaa 27345491  T

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Target: scaffold0433 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 183 - 345
Target Start/End: Original strand, 10853 - 11014
Alignment:
Q  183 tctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaaccttggaggaaggccacctttggcattctatga 282  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  || |||||||   |||||||||||| ||||| |||||||||    
T  10853 tctccatgagaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgctggctccttccaaccacagaggaaggccacgtttggaattctatga 10952  T
Q  283 ttcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10953 ttcggaacttcctggtggagcttcaaattcagccattcctttactcgtgcga-catcgatggc 11014  T

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Target: scaffold0192 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 91 - 345
Target Start/End: Complemental strand, 8286 - 8027
Alignment:
Q  91 gatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccgggaggaatattgaacatctccatg 190  Q
    |||||||||||||| |||||||||   ||  ||||||||||||||||| |||||||| | ||||||||||||| ||||||||| | | || ||||| ||     
T  8286 gatttccctgacaatgtggaaatcgtacct-tactcatgcacctgggaacagttcccttctgccaacgtcatcacgggaggaacagtaaatatctctata 8188  T
Q  191 ggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtccc------ctccaaccttggaggaaggccacctttggcattctatgatt 284  Q
    ||||||||||| ||||| || ||||| |||||||||||||| ||| |||||||       |||||| | |||||||| ||||| ||||||||||| || |    
T  8187 ggaagcatgaatagaaaatttgaggagctcatgagtgtcaatttgctggtcccttttgattccaacatcggaggaagaccacccttggcattctacgact 8088  T
Q  285 cagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    | ||||| ||| |||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  8087 ctgaactgcctagtgggggttcaaattcagccattcatttgctcgtgcgagcatcgatggc 8027  T

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Target: scaffold0002 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 42 - 345
Target Start/End: Complemental strand, 386845 - 386543
Alignment:
Q  42 cggctacgagcctggtaagaaagttgccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagca 141  Q
    ||||| ||||||||| || |  ||||||||||  ||||||||||| | ||||||||| |||||| | |||||| ||||| |||||||| |||||||| ||    
T  386845 cggctccgagcctggcaaaactgttgccatgtttgtggaacatctagatgatttccccgacaaccttgaaatcgccccc-tactcatgaacctgggaaca 386747  T
Q  142 gttcccctatgccaacgtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtc 241  Q
    ||||||||  |||||| ||||| |  ||||||  ||| ||||||||||||||||||||||||| || || || || |||| ||| || ||||| || |||    
T  386746 gttcccctccgccaacatcatcactagaggaacgttggacatctccatgggaagcatgaagaggaaatttgaagagctcacgagcgttaacttttttgtc 386647  T
Q  242 ccctccaaccttggaggaaggccacctttggcattctatgattcagaacttcctggtggagcttcaaattcagccattcctttgctcgtgcgagcatcga 341  Q
    ||||||||||  |||||||| |||||  || | ||| | || |  || || ||| ||||||| |||||||| ||||| |||||||| ||  |||||||||    
T  386646 ccctccaaccacggaggaagaccacccctgacgttccacgacttggagctacctagtggagcctcaaattctgccatacctttgcttgtatgagcatcga 386547  T
Q  342 tggc 345  Q
    ||||    
T  386546 tggc 386543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 39524 - 39705
Alignment:
Q  67 gccatgtccgtggaacatctcggtgatttccctgacaacgtggaaatcacccccctactcatgcacctgggagcagttcccctatgccaacgtcatcccg 166  Q
    ||||||| |||||| ||| | |||||||| ||||||||||||||| ||    ||||||||||||| |||||| ||||| || |  | |||||||||| ||    
T  39524 gccatgtacgtggatcatttgggtgattttcctgacaacgtggaagtc-gtaccctactcatgcagctgggaacagtttccatccgtcaacgtcatcacg 39622  T
Q  167 ggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaa 249  Q
    |||||||   ||||||||||||||||||||||||| ||||| || || ||||||||||| |||||| || |||||||||||||    
T  39623 ggaggaacgatgaacatctccatgggaagcatgaaaagaaattttgaagaactcatgagcgtcaacctgctggtcccctccaa 39705  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 24040001 - 24039908
Alignment:
Q  158 gtcatcccgggaggaatattgaacatctccatgggaagcatgaagagaaagttcgaggaactcatgagtgtcaacttgttggtcccctccaacc 251  Q
    |||||| | |||||||  ||| ||||||||||||||||||||||||| || ||||| || |||||||| ||||||||| |||||||||||||||    
T  24040001 gtcatcacaggaggaacgttggacatctccatgggaagcatgaagaggaaattcgaagagctcatgagcgtcaacttgctggtcccctccaacc 24039908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 16093051 - 16093091
Alignment:
Q  305 tcaaattcagccattcctttgctcgtgcgagcatcgatggc 345  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  16093051 tcaaattcagccattcctttgctcgggcgagcatcaatggc 16093091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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