View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21419_low_1 (Length: 442)
Name: NF21419_low_1
Description: NF21419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21419_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 41846181 - 41846611
Alignment:
| Q |
1 |
acattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacctcaaaagttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846181 |
acattgttggccttttctcaggttgtaacgcaacacaagctagtccaacattcagcattgaaacaagctcctcctcaatgttcttgtacctcaaaagttc |
41846280 |
T |
|
| Q |
101 |
ttgatcaaacacctctgatgtccactcatccttcacaacagaccgaacccattttggaagatcagcttcttgttcttcaaattccacgcaagagcgaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846281 |
ttgatcaaacacctctgatgtccactcatccttcacaacagaccgaacccattttggaagatcagcttcttgttcttcaaattccacgcaagagcgaact |
41846380 |
T |
|
| Q |
201 |
cctacgggagaagaatactgagaggaaggagctcttcctgtcaaaatttccaacaccaatactccaaaagcatacacgtctgcctcttgtgaaagcttct |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41846381 |
cctactggagaagaatactgagaggaaggagctcttcctgtcaaaacttccaacaccaatactccaaaagcatacacgtctgcctcttgtgaaagcttct |
41846480 |
T |
|
| Q |
301 |
tagcttccgcctgttctggagccctgtacccacccagccttgcaactgcgtgagcagggtttaataatagtgacaaaccaaagtcacctatgcaagcaac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41846481 |
tagcttccgcctgttctggagccctgtacccacccagccttgcaactgcgtgagcagggtttaataacagtgacaaaccaaagtcacctatgcaagcaac |
41846580 |
T |
|
| Q |
401 |
cccattcttgtcaagtatcacatttgatgat |
431 |
Q |
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| T |
41846581 |
cccattcttgtcaagtatcacatttgatgat |
41846611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 26890773 - 26890655
Alignment:
| Q |
45 |
ccaacattcagcattgaaacaagctcctcctcaatgttcttgtacctcaaaagttcttgatcaaacacctctgatgtccactcatccttcacaacagacc |
144 |
Q |
| |
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||||||| ||||||||| |||||||| ||||||||||||||||| | || ||||||||||||||| ||||| |||||||| || |||| || || | |
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| T |
26890773 |
ccaacatgcagcattgacacaagctcttcctcaatgttcttgtatcgcagaagttcttgatcaaaaacctccccagtccactcttctctcacgactgatc |
26890674 |
T |
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| Q |
145 |
gaacccattttggaagatc |
163 |
Q |
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| T |
26890673 |
gaacccatttgggaagatc |
26890655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 431
Target Start/End: Complemental strand, 26890507 - 26890387
Alignment:
| Q |
311 |
ctgttctggagccctgtacccacccagccttgcaactgcgtgagcagggtttaataatagtgacaaaccaaagtcacctatgcaagcaaccccattcttg |
410 |
Q |
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|||||| || || ||||||||||||| | |||| ||| ||| |||||||||| | ||||||||| ||||||||| |||||||||||| || |||||| |
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| T |
26890507 |
ctgttcaggtgctctgtacccacccaatcgtgcagttgcatgaacagggtttaacagtagtgacaacccaaagtcagatatgcaagcaacaccgttcttg |
26890408 |
T |
|
| Q |
411 |
tcaagtatcacatttgatgat |
431 |
Q |
| |
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||||||| ||||| |||||| |
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|
| T |
26890407 |
tcaagtagtacattggatgat |
26890387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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