View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2141_high_1 (Length: 440)

Name: NF2141_high_1
Description: NF2141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2141_high_1
NF2141_high_1
[»] chr3 (4 HSPs)
chr3 (23-424)||(52610218-52610619)
chr3 (285-369)||(11761567-11761651)
chr3 (26-87)||(22627861-22627922)
chr3 (184-222)||(11761684-11761722)
[»] chr5 (1 HSPs)
chr5 (23-424)||(11236018-11236419)
[»] chr8 (3 HSPs)
chr8 (23-424)||(23482519-23482898)
chr8 (23-273)||(23473152-23473402)
chr8 (23-248)||(34905892-34906117)
[»] chr6 (2 HSPs)
chr6 (232-299)||(34960018-34960085)
chr6 (327-365)||(34959981-34960019)
[»] scaffold0021 (1 HSPs)
scaffold0021 (36-90)||(3807-3861)
[»] chr7 (2 HSPs)
chr7 (37-90)||(22485453-22485506)
chr7 (183-248)||(38645580-38645645)


Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 23 - 424
Target Start/End: Original strand, 52610218 - 52610619
Alignment:
Q  23 ttgaattcctcttttcttcctctacaaaagccctcaatttatttatagattggagaagtttaatttttgagatctcccccttctttcttgttttccagcc 122  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  52610218 ttgaattcctctcttcttcctctacaaaagccctcaatttatttatagattggagaagtttaatttttgagatctcccccttctttcttgttttccggcc 52610317  T
Q  123 accgtgagttgccatttggaaaaccaaacctaccatattctttctcatgatgtcagcaacaaaacccctatgtttattttgcaatcggagcaactttgtc 222  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52610318 accgtgagttgccatttggaaaaccaaacccaccatattctttctcatgatgtcagcaacaaaacccctatgtttattttgcaatcggagcaactttgtc 52610417  T
Q  223 ggcggccactgtgccggagttcacctgtaccgcgccggaaaagtggttgacggccatttactccatttttctccttcgtgatgagtttcatcttcattcc 322  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52610418 ggcggccactgtgccggagttcacctctaccgcgccggaaaagtggttgacggccatttactccatttttctccttcgtgatgagtttcatcttcattcc 52610517  T
Q  323 ctcctctaaagtgcattgtaggagttttgtatactcattttcggatttttgaataaggacattatttaaacatgtttttgtccatttattctccgttttg 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52610518 ctcctctaaagtgcattgtaggagttttgtatactcattttcggatttttgaataaggacattatttaaacatgtttttgtccatttattctccgttttg 52610617  T
Q  423 at 424  Q
    ||    
T  52610618 at 52610619  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 285 - 369
Target Start/End: Complemental strand, 11761651 - 11761567
Alignment:
Q  285 ccatttttctccttcgtgatgagtttcatcttcattccctcctctaaagtgcattgtaggagttttgtatactcattttcggatt 369  Q
    ||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||  |||||||||||    
T  11761651 ccatttttctccttcttggtgagtttcatcttccttccctcctctaaagtgtattgtaggagttttgtatacggattttcggatt 11761567  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 22627922 - 22627861
Alignment:
Q  26 aattcctcttttcttcctctacaaaagccctcaatttatttatagattggagaagtttaatt 87  Q
    ||||||||| |  ||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  22627922 aattcctctctctttcctctacaaaagcccgcaatttatttctagattggagaagtttaatt 22627861  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 11761722 - 11761684
Alignment:
Q  184 aaacccctatgtttattttgcaatcggagcaactttgtc 222  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  11761722 aaacctctatgtttattttgcaatcggagcaactttgtc 11761684  T

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Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 23 - 424
Target Start/End: Original strand, 11236018 - 11236419
Alignment:
Q  23 ttgaattcctcttttcttcctctacaaaagccctcaatttatttatagattggagaagtttaatttttgagatctcccccttctttcttgttttccagcc 122  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||    
T  11236018 ttgaattcctctcttctttctctacaaaagccctcaatttatttttagattgaagaagtttaatttttgagatctcccccttctctcttgttttccggcc 11236117  T
Q  123 accgtgagttgccatttggaaaaccaaacctaccatattctttctcatgatgtcagcaacaaaacccctatgtttattttgcaatcggagcaactttgtc 222  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  11236118 accgtgagttgccattgggaaaaccaaacccaccatattcttcctcgtgatgtcagcaacaaaacccctatgtttattttgcaatagtagcaactttgtc 11236217  T
Q  223 ggcggccactgtgccggagttcacctgtaccgcgccggaaaagtggttgacggccatttactccatttttctccttcgtgatgagtttcatcttcattcc 322  Q
    |||| |||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||    
T  11236218 ggcgaccaccgtgccggagttcacctctgccgcgccggaaaagtggttgacggccatttactccatttttctccttcttgttgagtttcatcttccttcc 11236317  T
Q  323 ctcctctaaagtgcattgtaggagttttgtatactcattttcggatttttgaataaggacattatttaaacatgtttttgtccatttattctccgttttg 422  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||||||||    
T  11236318 ctcctctaaagtgtattgtaggagttttgtatacgcattttcggatttttgaaccaggacattatttaaacatgtttttggcgatttattctccgttttg 11236417  T
Q  423 at 424  Q
    ||    
T  11236418 at 11236419  T

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Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 23 - 424
Target Start/End: Complemental strand, 23482898 - 23482519
Alignment:
Q  23 ttgaattcctcttttcttcctctacaaaagccctcaatttatttatagattggagaagtttaatttttgagatctcccccttctttcttgttttccagcc 122  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||    
T  23482898 ttgaattcctctcttctttctctacaaaagccctcaatttatttttagattgaagaagtttaatttttgagatctcccc-ttctctcttgttttccggcc 23482800  T
Q  123 accgtgagttgccatttggaaaaccaaacctaccatattctttctcatgatgtcagcaacaaaacccctatgtttattttgcaatcggagcaactttgtc 222  Q
    |||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||    
T  23482799 accgtgagttgccattggaaaaaccaaacccaccatattcttcctcatgatgtcagcaacaaaacccctatgtttattttgcaatagtagcaactttatc 23482700  T
Q  223 ggcggccactgtgccggagttcacctgtaccgcgccggaaaagtggttgacggccatttactccatttttctccttcgtgatgagtttcatcttcattcc 322  Q
    |||| |||| |||||                     |||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||| ||||    
T  23482699 ggcgaccaccgtgcc---------------------ggaaaattggttgacgaccatttactccatttttctccttcttggtgagtttcatcttccttcc 23482621  T
Q  323 ctcctctaaagtgcattgtaggagttttgtatactcattttcggatttttgaataaggacattatttaaacatgtttttgtccatttattctccgttttg 422  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||||||||    
T  23482620 ctcctctaaagtgtattgtaggagttttgtagacgcattttcggatttttgaaccaggacattatttaaacatgtttttggcgatttattctccgttttg 23482521  T

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Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 23473402 - 23473152
Alignment:
Q  23 ttgaattcctcttttcttcctctacaaaagccctcaatttatttatagattggagaagtttaatttttgagatctcccccttctttcttgttttccagcc 122  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||| ||||||||||| |||    
T  23473402 ttgaattcctctcttcttcctctacaaaagccctcaatttatttttagattggagaagtttaatttttgagacttcccccttctctcttgttttccggcc 23473303  T
Q  123 accgtgagttgccatttggaaaaccaaacctaccatattctttctcatgatgtcagcaacaaaacccctatgtttattttgcaatcggagcaactttgtc 222  Q
    || ||||||||||||| |||||| |||||| | ||||||||| ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  23473302 actgtgagttgccattgggaaaatcaaacccatcatattcttcctcatgatgtcagcaacaaaacctcgatgtttattttgcaattggagcaactttgtc 23473203  T
Q  223 ggcggccactgtgccggagttcacctgtaccgcgccggaaaagtggttgac 273  Q
    |||| |||| |||||||||||||||| ||||| ||| ||||||||||||||    
T  23473202 ggcgaccaccgtgccggagttcacctctaccgtgccagaaaagtggttgac 23473152  T

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Target: chr8; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 34906117 - 34905892
Alignment:
Q  23 ttgaattcctcttttcttcctctacaaaagccctcaatttatttatagattggagaagtttaatttttgagatctcccccttctttcttgttttccagcc 122  Q
    |||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||||||||| | |||    
T  34906117 ttgaattcctctcttcttcctctacaaaagccatcaatttttttttagattggagaagtttaattttcgagatctcccccttctctcttgtttttcggcc 34906018  T
Q  123 accgtgagttgccatttggaaaaccaaacctaccatattctttctcatgatgtcagcaacaaaacccctatgtttattttgcaatcggagcaactttgtc 222  Q
    ||||||||||||||||  |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34906017 accgtgagttgccattgagaaaaccaaacccaacatattcttcctcatgatgtcagcaacaaaacccctatgtttattttgcaatcggagcaactttgtt 34905918  T
Q  223 ggcggccactgtgccggagttcacct 248  Q
    ||||  ||| ||||| ||||||||||    
T  34905917 ggcgatcaccgtgccagagttcacct 34905892  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 34960085 - 34960018
Alignment:
Q  232 tgtgccggagttcacctgtaccgcgccggaaaagtggttgacggccatttactccatttttctccttc 299  Q
    ||||||||||||||||| ||| ||||||| |||||||||||| | |||||||| ||| ||||||||||    
T  34960085 tgtgccggagttcacctctactgcgccgggaaagtggttgacagtcatttacttcatatttctccttc 34960018  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 34960019 - 34959981
Alignment:
Q  327 tctaaagtgcattgtaggagttttgtatactcattttcg 365  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  34960019 tctaaagtgtattgtaggagttttgtatacacattttcg 34959981  T

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Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 3861 - 3807
Alignment:
Q  36 ttcttcctctacaaaagccctcaatttatttatagattggagaagtttaattttt 90  Q
    |||||||||| ||||||||||||||||||||  |||||||| |||||| ||||||    
T  3861 ttcttcctcttcaaaagccctcaatttatttggagattggaaaagtttgattttt 3807  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 22485453 - 22485506
Alignment:
Q  37 tcttcctctacaaaagccctcaatttatttatagattggagaagtttaattttt 90  Q
    ||||||||| |||||||||||||||||||  ||||||||| |||||| ||||||    
T  22485453 tcttcctcttcaaaagccctcaatttattggtagattggaaaagtttgattttt 22485506  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 38645580 - 38645645
Alignment:
Q  183 aaaacccctatgtttattttgcaatcggagcaactttgtcggcggccactgtgccggagttcacct 248  Q
    |||||| |||||||| |||  ||||||||||||| ||||||||| ||||  ||||||| |||||||    
T  38645580 aaaacctctatgtttgtttcacaatcggagcaacattgtcggcgaccaccttgccggaattcacct 38645645  T

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