View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2141_high_3 (Length: 317)
Name: NF2141_high_3
Description: NF2141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2141_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 50484678 - 50484390
Alignment:
| Q |
17 |
cataattactgtgtgacatgcatgctggtaaattatcctcagaaagcaatttgtttagtttgaaatgtatgaaannnnnnnnnnnnnnnnnnnnnagtct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50484678 |
cataattactgtgtgacatgcatgctggtaaattatcctcagaaagcaatttgtttagtttgaaatgtatgaaatttttttgtgatttcttttttagtct |
50484579 |
T |
|
| Q |
117 |
aaattacagaaaaatattaatgaactaaaattatcctctaaaagcaacgatatgatgtttcaattttttaaattgataaaagtactatctgataaatctg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50484578 |
aaattacagaaaaatattaatgaactaaaattatcctctaaaagcaacgatatgatgtttcaattttttaaattgataaaagtactatctgataaatctg |
50484479 |
T |
|
| Q |
217 |
taggtgccttcnnnnnnnnnnnnnttgtaggttaaccaactagcatagtgatca-ttttcattttgtaaatattcatcgaagtttaata |
304 |
Q |
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||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
50484478 |
taggtgccttcaaaaaacaaaaaattgtaggttaaccaactagcatagtgatgatttttcattttgtaaatattcatcgaagtttaata |
50484390 |
T |
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