View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2141_low_4 (Length: 276)
Name: NF2141_low_4
Description: NF2141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2141_low_4 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 35 - 276
Target Start/End: Complemental strand, 39209728 - 39209491
Alignment:
| Q |
35 |
aagggaagaagattggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacctttatgttggtg |
134 |
Q |
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| T |
39209728 |
aagggaagaagattggatggtggcaaggagaaggaggtgaggggaaggacgataaagaaggggaaaacagtgtgagggagaagacacctttatgttggtg |
39209629 |
T |
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| Q |
135 |
gtgattgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtcacctcttgtgcagtgtgtgtgcaccgtccaatgtggagtta |
234 |
Q |
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| T |
39209628 |
gtgattgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtcacctcttgtgca----gtatgcaccgtccaatgtggagtta |
39209533 |
T |
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| Q |
235 |
tcatcatcacctctgagcataaacaacgcgatgcaccaggtt |
276 |
Q |
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| T |
39209532 |
tcatcatcacctatgagcataaacaacgtgatgcaccaggtt |
39209491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 39 - 276
Target Start/End: Original strand, 27514142 - 27514386
Alignment:
| Q |
39 |
gaagaagattggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacct----------ttatg |
128 |
Q |
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| T |
27514142 |
gaagaagatcggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacttaggtttggatttatg |
27514241 |
T |
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| Q |
129 |
ttggtggtgattgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcatcaattggtc-acctcttgtgcagtgtgtgtgcaccgtccaatgt |
227 |
Q |
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| T |
27514242 |
ttggtgatgattgtttctcttgtatagaaggaaaggaagaaaagagaagcttgcagcaattggtcaacctcttgtgca----gtgtgcaccgtccaatgt |
27514337 |
T |
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| Q |
228 |
ggagttatcatcatcacctctgagcataaacaacgcgatgcaccaggtt |
276 |
Q |
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| T |
27514338 |
ggagttatcatcatgacccctgagcataaacaacgtgatgcagcaggtt |
27514386 |
T |
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