View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2141_low_7 (Length: 236)
Name: NF2141_low_7
Description: NF2141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2141_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 1747141 - 1746981
Alignment:
| Q |
61 |
gtatttgattattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaatataatgcaattagttatgtgttatac |
160 |
Q |
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| T |
1747141 |
gtatttgattattactctatgcaccataatttcctagtaatcttgtatggtaagatttttatataaggtgcaatataatgcaattagttatgtgttatac |
1747042 |
T |
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| Q |
161 |
aaagttataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgat |
221 |
Q |
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| T |
1747041 |
aaagttataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgat |
1746981 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 6006005 - 6005819
Alignment:
| Q |
34 |
ctttgaaaatgccaacttagattttctgtatttgattattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaa |
133 |
Q |
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| T |
6006005 |
ctttgaaaatgtcaacttagatttgttgtatatgtttgtcaccctgtgcatcataattgccaattaattgtgtatggtaacatatttatataatgcacaa |
6005906 |
T |
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| Q |
134 |
tataatgcaattagttatgtgttatacaaagttataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgat |
221 |
Q |
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| T |
6005905 |
tgtaatataacaagttgggtgttatacatcgttttaaattatatagtttt-cttcactttcccttgaattatatcatctggacttgat |
6005819 |
T |
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